G902840 (LOC106602714)


Basic Information

Item Value
gene id G902840
gene name LOC106602714
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 53670120 ~ 53674811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1027004
CCCTTAGTGGTTACCGGTGCTCCACCACGAAGCTCATGGTCGTCCCATCAAAGGAGGGCGGTGCGATTATTCTCGGGCGTTGCTGCGACGTGATGCTGATGACCGCTGGTTTCCCTTCTGACGTCACCGCACTCCCAGGGGGGACGGGCACTGATGCCGGCACTGACTCTCCCGTAGCACTGTAGTAGGGGCTCTCTGCCCCCATCATGTTACCCTCCTGCACCAGGGTGTATTTCCCTTGAGCCGTctccccactctcttcctctaATTGGGACACCATGTGGGTTGCAACCTGTGGTGCCATCACCGTCTGGGCAGCAAGAGTGGGTGAGAGGAACCCCGGGTAGATCATGTAGGTGGGTGCGTACATCCCTCCCGGGTTCAGTGCCAGGGGGGATACGGACATGGGGGTCACTGGCTGTGGCGGAGGCATAGGCATGGGCATGTCCACATACtggcccatctcagggtggaaGAGACACTGGGTGACTGGCTCAATCGGCGTGTCTACCAGGTAGTATTGTCCGGTGGTGGGATCAAAGAGCATCTTCCTCTGTGTACGCTGGAAGGGGTCTCCCCCCAAAGGGGTGGTGGGCAAGGGGGCAATAGAGGGGGAGAAGCAGAACACCTGCGGCTGGGGCGTTCCTTGCTTGACCACTGGTCGAGAGTGGTGGTAGATGGTGGCGGTAGTGGCGGTATCCGGGGCTCGCGTCTCTATGACAACAGGGGACCGTTTGAGGGACTGGATAGAATTATGCTTGTGTCTCTTGGTGACGGTGATGCCAGGTTGACTGGCGGCAGGGCTGCTTGGGAATACCTGCTCTTGAATGGGCAGTTTCATTTGACCGACACTCCTGCCTTCTACAGGTATTGTTAAGTAGTTTTCAGAGTCTGGGTTGCCAGATTTGATGGGCTGTGGTGGAGTCTCTGTGGTGGGGTTGCTTTTGAACCTTCCCCTGTCTACAAGGGCTCGTTTTGGGGGggatattttcaatgacagtggaGCTTTCGGGGTCTTAGAGCTAATGCTTTTCACCATAGAGGTTGCATGTGATGGAGAACAGGTTTGTGGCCCATTCCAACTATTAGAGCTGCTGCTACTGACAGCTGTCTTAATGCTGTTCGCCAAATGAAACACGCTTTTGTTACTAAACGTCTTACTTTGTTGTGACTGGGTTTTAAAGGTGTCCTCTGTTAATGGGACATGGATTATTCTTAGACAACCTTTCTCTTCTTGAATGTTGCATGTTTCTGGCAACCTGTCTGTGTTTATCGCTGTACTAAGCCTCTCCCTGCCACCTGCTGCACCTAGCTCCTCGGGGCCACCATGCTCCTCTCTAGCAATAAGTGACAGAACATGACTGTCTGTAATAGGCCAGGGAGCCTGGCTCTTGCGCTTCCATTCATTTCTGTCAAAAACATAAAGCTGTTCCATTGTTTTAACGGCAGCCTTTAGTTTCTCTAATGCCACCTGTTTTGGTATTTTCGACTCTGGTTTGCGTTCACCTGCCTCGACCATTTTTTCCTGCTTTTGTTTAGCCTCGGACTGATCTGTGTTTGGCTGTTTTGCGAAGCCAATTGGAGGTCTGCCCGTCGCCCTGTGCAGCGACATGGGTTCATTTTTGGCACATTCTGGAGATGGTTTGGGGGATGACCTATCGTTCTCAATTTGTCTCCGCTTTGGAGCCTCGGTTACAAGCACACGCTGTTTAGTactgctatttgtatttacagactGACATTTTATTACAATTGAAGAGGGAGGCGATTTCTTATATAGTTCTTTCTTAGAACTTTTATTTTCTTCGCGTAATGAGGCAGCAGCAGAGGCGACTGCGCCTTTACTCTCGCTGTTATCCACTGAGACTAAACGATATGAACTCTTGACCAATTTACGCACGTCTCTAACCTGATGAATTGGCGTCTGAAACTTGCACTTATTGTCCCTTATATCCCTAACCGTAAAGTGTGGCACTCTGTCTGACGCTGGCAGCACCTGACATTTGGAGTCAGCTGCTGACTTTATTGGATAACTTATATTAGGGGTTAACAATTTGTCAATATTTAGCGGATTGCATTTGTTTTCTTTTACGCTCCTCAGACGTATTTTTATCTCGGGTGCCTTTGACCCTTTCACGATTCCTGCATTGTTGTCAGGTCTAAACTTTCTCTCCCCGTACCCCCGTTGCTCTTTTTGCGCACCAACTAAAGTACTGTCTGACACCTTTTCTTTCAATTTATTTTCTTTGGGGAGAAGCTGGGAACTTGGAACAAACAAGTGTGACAATTTAGTTAGCTTGCTACTTACAACTCTGGAGTCTAACTCCCTTCCCCCCGTATAATCTGTTGTCGAGGGTGTCCCATCTAAAATGGTACGAATTTCATGTTTCTCTTGGGGCTCTGGCTCACCATCCCTCCATGATTTGAATGCGCTGTTTTGGCTATGGCTCAGGGATCCTCTTGTGGGCTCGCATGCATCCTTTTGAAAATCTAATCGTGCCTCATTTATAGTCTGAAAGCTTTCTAATGCCTCAGTAAGCTCTTCTTTGGGGTCACAAGAATTAGGTCTAAGGTCCACAGCCCCTTGTTCATCAGAAGAATTGCTTGTGTATCCCGAACCCGATTCTGAGGTTTGACTATGCACGCctttctctgtatccctctctcttacCCCATCTTGATCCTTGCATTGAAAGCATGGGGAGTGCGTGGGATGCGTGTCCcgtatctcccccctctccatcttgCGCTCCTGTTCAAATTGCATTTTTTtggatattacattttttaagAGACTTGATGCGAAACTTGCCTTCTTATGTGTGCATTCCATGCTATCACCCGCATCACTGTGTTGGTAGCTCACTTCATATTCTGGCTCTGCTGGCAAGGTGCCGGGAACTTCATCCATGGAACGTGCTCCTGACACATTTTCTGAATATTTGGGAGGTTTCCCGCGTTCAGGTGACCCCGCTTCAACATTACAGCGAAAATCCAATGTCTTTGTCAAAGTGATAACCTCACTGCCTGGTTCAAATGGGCCTGTAAACTCTACGTTTTGGGTAGAGGAAGATGCATGTTGTGGACTAGATATTTTTGTATTCAAAGAAAACATATTGGTTTGGGGACCTTTCTTACTGCTTATGGCAATACCATTTATACTCTTATACTCTGCGTTCTTGCTCATTTCAAAAGTTGCAGTTGCACTCTTTTGGGCGATTAGATTTTGCTCTCTGCCCTGTGACATGTTACCATATTTAAGGTCAACGAAAGCTGACCACTTGTTTAAACCAAGCCCATATTCTGACATTGAAGACTCACTTGAAGTGCTCAAATGTATAGCATCGAAATAGGGACATGCTAAACTCCTAAATGATTTCGCGGTTAAATTACGCACTTCTTTATCAGCGTCGTCCAGTTCACTTATTGAACTGGACGCACCGCTGGAATATTCGTTAACATCTTTCCCTCTTAATTTAGTTGCAAAGTGTTGGCGTCCCGGGGCTGGGATAAAATATTGGGATCTATCGCACAAGGCTTCCGCTCTGGCGTCAGTGCTTGTAAAAAAGAAGTGACTCCTGTCTCCCACATGCTTGGTATGATAACAAATGTTTTCATTTTCAATTGTATTGTTATAGTCGTTTATCGCTGTGGATGAGGTCTTGATTGACAGGTGAATTTGCCCCGCCGAATTCCCACTACCATTTTGGTTTTTACAAATGCTTTCATCTGAGCTGGGGCATTTGTCAGAGTCACAAAACTCACTCTCAGTGCTGACAACTGCACAACCAGCAACACTTTGGTGCACATTATTATATTGCGCCTTACTGCTTTTCACTTTCGCCAGGCTCCTACCATCCACGAGGCCTATCAAAGTCCCCCCTGTTGTTTCATCGCTTTCAAAAGAGGCATAATCCACAAATGAATAAACCAGATTGTCGTCCTCAATATCCCAACAGCTTCCCCGTCCAAAATCATAATCGACATCAtggtcaagctctgtcagttggaTTTCGTGCGTTGTAATGTAGTGCGATTCGTCTATCACGGTATCAGGCGCACAATGGTCCGACAATACTACGCTCTCACAGTCGTCCGATTCGGATTTACTGTTCAAATACATGTCCGTGTATTGTAACTCCTCACACTCGCTGGGGACATTATTATCACGAGGCACAATTTCGCTCTGGAGTTCTGTCATATTGTCATTCTCCAAGTCCACATTGCTGTTAAATTCTGTCAAAGACGTGTTCATGGGGGGATCTTCCGATACAGGCATATCTACTGACTTGTCCTTGGATTTTACCTCATAGATTTTATCCACATTGTCATCAATCTCGCGAATCCTGGGGCTCCTCTCTCCGGACGTATCACTGTTGCATTTGAATACCGCCAGTTGGTTACCGTCACCGGTAAAAGCCACTTTAACCGTTTTTGTGACCTCTGATTTCATATCAATTAAGTCATTCAAATCAACATAATTGTATTCGTCACTTTTTGTTTTAGGGTTGCACTTGTCATTGTCTTTATTTCCAGGGAGCAGCTTTCTATAAGGTCCGGTGTTGTCTCGGTAAGTGAGAGTTTTCTCAACTGCTTCCATTTGTGCCGTTTCTTACCGCCAAAAATGCTCTGTTAGCGATGTTATCCTGACACAGGACGAAAAACTCTGCACGAGGGAGAGActggagtgaa

Function

NR:

description
uncharacterized protein LOC110534275

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1027004 True 4692 TUCP 0.47 1 53670120 53674811
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534276 LOC106602715 coding upstream 22409 53615925 ~ 53647711 (+)
LOC110534273 LOC106602713 coding upstream 69853 53561543 ~ 53600267 (+)
LOC110534272 LOC106602712 coding upstream 116117 53522853 ~ 53554003 (+)
LOC110534270 LOC106602803 coding upstream 169337 53495704 ~ 53500783 (+)
LOC110534269 LOC106591825 coding upstream 190754 53453977 ~ 53479366 (+)
LOC110534277 lgi2 coding downstream 33571 53708382 ~ 53718910 (+)
LOC110534278 ccdc149 coding downstream 44795 53719606 ~ 53741239 (+)
LOC110534280 LOC106602719 coding downstream 84023 53758834 ~ 53773112 (+)
LOC110534281 LOC106602720 coding downstream 121913 53796724 ~ 53857235 (+)
primpol primpol coding downstream 204076 53878887 ~ 53902069 (+)
G902837 NA non-coding upstream 4851 53665038 ~ 53665269 (+)
G902834 NA non-coding upstream 6405 53663461 ~ 53663715 (+)
G902831 NA non-coding upstream 9123 53660792 ~ 53660997 (+)
G902808 NA non-coding upstream 15282 53652494 ~ 53654838 (+)
G902802 NA non-coding upstream 58147 53611694 ~ 53611973 (+)
G902841 NA non-coding downstream 3218 53678029 ~ 53678388 (+)
G902847 NA non-coding downstream 13118 53687929 ~ 53688231 (+)
G902879 NA non-coding downstream 99242 53774053 ~ 53774928 (+)
G902881 NA non-coding downstream 104425 53779236 ~ 53779459 (+)
G902707 NA other upstream 150332 53516107 ~ 53519788 (+)
LOC110534253 hinfp other upstream 1134470 52532434 ~ 52542498 (+)
G901849 LOC106602874 other upstream 1194755 52450218 ~ 52475365 (+)
G898894 LOC106603005 other upstream 3632435 50034990 ~ 50037685 (+)
LOC110534189 LOC106602925 other upstream 4237162 49426785 ~ 49432958 (+)
helt helt other downstream 302620 53977386 ~ 53980090 (+)
G904621 LOC106567469 other downstream 1556088 55230899 ~ 55231255 (+)
G904663 NA other downstream 1620426 55295237 ~ 55296054 (+)
G906606 LOC100136012 other downstream 2981488 56656299 ~ 56656552 (+)
LOC110534329 LOC106602762 other downstream 3315193 56953710 ~ 56991150 (+)

Expression

G902840(LOC106602714) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 8.
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G902840(LOC106602714) Expression in each Bioproject

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G902840(LOC106602714) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network