G904446


Basic Information

Item Value
gene id G904446
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 54907784 ~ 54910341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1028810
TAGAAGTTTGAGTTTATTAACATCAAAGACAGTGACTTGGAGAAGAAGGCGGCAAAGCAGAACCAAGGCAATTAAGTGGAGCAGCTGTATAGAGCGATGGGAATTCTAGCTAAGACATGCGTAGTCTGGTCCTCATAAAGAATCACATTAAAACAGTAAAAAACACCAAGCCTGGTCCTggatctgtttgtgccatcagGCCATGACAACAACCATATTGTTGGCTatagacaacaaacagatctgggatcaggcaaGAAAACATTCCTCCTTGCTTTCAGTTCCACCATCACCTAGGTCCTAAGGAATCCATGCCAATAGCTCACACTGTAATTTAAGGTTAACATTTGAAAGTGAACATGAACTGTAGCCTACTGCGGATGAAGTCACTACTGTGTGCGTGCAACTTCTCGAGTTGGCTTGAAAAACCAccaacatcaatcaatcaatgggAAAATATTAATCGCCACCGTTTGGGTTGGGCAACATTGGACAAATGTTTCAACATTGTTTTGGGTTGCCAGGCGCCTGCTCTGTCATGATTAGGAGTCGGGCCTAAGTTTAGAAAGGCTAAGGCTATTAGTCAGACAGACCACTGCTAGTGTTCAGTCCTGACTGACCTGCTGGACTGTGTTGTCATGGTTACCACCCCATAACAAGGAAGTGGCAGCAGAGTGGTGGGGGGATGCAAGGGGAGACATTCCGTATTGAAGTCCCACCGTCTTTAGTGGCTCTGACGCAAGACCACCCATTGTCGACATGCCCCTATTAAATGAGCCCGGCAGCAGGAGGCATTGTGCGATAAGATGTGGGAGGCCGCTCTTGTAAAGGGCCATCCTTGTAAAAGACTGGACATTGTGTTAAGTCTGGCGGAGAGGAGATCTGTTATACACTCTAACTGTGACTGTAgatgggaaaagagagggagtgagaggagcaTTGTGCCTCGCTCTTTAGCCATAAGACATGTCGTAGGCCAGCGTCCCAAATATAacacactacttttgatcagagccctatagggtgccatttgagacacagcccGTCCGGGCTGACGTATGGCCTCTGGGTCTTTTGTGACATTCACTGCCTCCCTTCATTTGCATTGCAGAGAGCAGGGAGATAAAAATATCCTGGCCTACTGCAGGGATGTGGCCTGTAGGATTGATTTAGGCTTGCTCTGAGAGTTACAGACAGAAATGGTACAACAGCTGTatggagagtacagtagattgAACTTGTTGATTCACGACCAGTTGAATTGAGCGTATGTATGGTCTGTGAACAACGATGCTGTTCATTGTGACAATTTCAAGAGAGGAAAAAGTCTGGTTAAGCAGTTCCTCTCACCTTCACCACTTCCAAGCCTCCATATACAGTTTGCTACATGTAAACATATTGCAAGCTCTACGTATAATAAAAAATAGTATGTCTTTACACTATGTACACAGAGCGGACGGCTAATCGGCTAAGCCCGTGATTTGTAGTATCCATTCTAATTCGTTCAGTGCAATGGAATGTAAGGGAGGATTTCTACTCTTATTTACAATTCGGGAGACACTACTGATGATGGTGCGGCTACATCAAGCTTCAAGTTAATGCACTCTAGTTGTTGTTATTTAAGTCAATGGCACAATGCTGTTTCAAAGGCAAGTGGTGTGACAAGCTGGCCtagttccagatctgtttgtgctggcttgccaatgaccataggagtgGACAAGACAGCACAAACGGGTCATTCTAGTGAGAAGCAAATGCAGGGCTGAAGAATCTACGGTATTACTTGAATCACGACCATTGGCGGTCAAGGAACACAATTACGCAATGTCATGTAGTACAAAAATCAGATGACAACATTCACAGTAGAAAAGTCAAGGATTACAAAGACGATTATTGTgacaaaacacagagacaaacaacACCATGTTGGGTGTTACTTCAGTCTGAAGAGCTACATGTTCAATGCTGTTTTTGATAGCATTAGCGTTCGTCTAGGTATAGCATATAGCAGGAAAAAATATTTCCTTTGTGTGCACGTCTACTCAATGCTAGAATGGAGGCGTTTTATCGAGAGCATTTAGAAACATTGCTTGTGATTGATACATAAATACAAATGTCAAAAGTACCACAAGTACATGAAAATACATTGCATGACCAAGTACATGTACTGTATTGTAAGAGGTAAAGGTAAAACTTTACAGTGGAATCATACCAAAGGACTAACTGGAGTATCATAAACAGAGGATAATGGCTCAATAACTTTCTGTACTTGCTAATAGTAACAGTTAATGCACTTGATACAGTACACAATAGGATACCTGATTCAATCCAACCCTGACAACCAGGTTTCCAAAACAAGTGAAAAACAACATTCTTTATTGACAATTCAAATTTCGTTCAGTTTCCTAATATCTGACT
>TU1028814
TTCACGGCTTCAAAGTGACACAGCATCGGATGATTTTATTGATTTTGTTTAACATTTGTTTAAATGATCAGTGCTGTAGAATAACATTCTAATATTCAGTCTTGTGTAGTTTAGTGATTACAGTAATTTCCTCCATGTAGAAGTTTGAGTTTATTAACATCAAAGACAGTGACTTGGAGAAGAAGGCGGCAAAGCAGAACCAAGGCAATTAAGTGGAGCAGCTGTATAGAGCGATGGGAATTCTAGCTAAGACATGCGTAGTCTGGTCCTCATAAAGAATCACATTAAAACAGTAAAAAACACCAAGCCTGGTCCTggatctgtttgtgccatcagGCCATGACAACAACCATATTGTTGGCTatagacaacaaacagatctgggatcaggcaaGAAAACATTCCTCCTTGCTTTCAGTTCCACCATCACCTAGGTCCTAAGGAATCCATGCCAATAGCTCACACTGTAATTTAAGGTTAACATTTGAAAGTGAACATGAACTGTAGCCTACTGCGGATGAAGTCACTACTGTGTGCGTGCAACTTCTCGAGTTGGCTTGAAAAACCAccaacatcaatcaatcaatgggAAAATATTAATCGCCACCGTTTGGGTTGGGCAACATTGGACAAATGTTTCAACATTGTTTTGGGTTGCCAGGCGCCTGCTCTGTCATGATTAGGAGTCGGGCCTAAGTTTAGAAAGGCTAAGGCTATTAGTCAGACAGACCACTGCTAGTGTTCAGTCCTGACTGACCTGCTGGACTGTGTTGTCATGGTTACCACCCCATAACAAGGAAGTGGCAGCAGAGTGGTGGGGGGATGCAAGGGGAGACATTCCGTATTGAAGTCCCACCGTCTTTAGTGGCTCTGACGCAAGACCACCCATTGTCGACATGCCCCTATTAAATGAGCCCGGCAGCAGGAGGCATTGTGCGATAAGATGTGGGAGGCCGCTCTTGTAAAGGGCCATCCTTGTAAAAGACTGGACATTGTGTTAAGTCTGGCGGAGAGGAGATCTGTTATACACTCTAACTGTGACTGTAgatgggaaaagagagggagtgagaggagcaTTGTGCCTCGCTCTTTAGCCATAAGACATGTCGTAGGCCAGCGTCCCAAATATAacacactacttttgatcagagccctatagggtgccatttgagacacagcccGTCCGGGCTGACGTATGGCCTCTGGGTCTTTTGTGACATTCACTGCCTCCCTTCATTTGCATTGCAGAGAGCAGGGAGATAAAAATATCCTGGCCTACTGCAGGGATGTGGCCTGTAGGATTGATTTAGGCTTGCTCTGAGAGTTACAGACAGAAATGGTACAACAGCTGTatggagagtacagtagattgAACTTGTTGATTCACGACCAGTTGAATTGAGCGTATGTATGGTCTGTGAACAACGATGCTGTTCATTGTGACAATTTCAAGAGAGGAAAAAGTCTGGTTAAGCAGTTCCTCTCACCTTCACCACTTCCAAGCCTCCATATACAGTTTGCTACATGTAAACATATTGCAAGCTCTACGTATAATAAAAAATAGTATGTCTTTACACTATGTACACAGAGCGGACGGCTAATCGGCTAAGCCCGTGATTTGTAGTATCCATTCTAATTCGTTCAGTGCAATGGAATGTAAGGGAGGATTTCTACTCTTATTTACAATTCGGGAGACACTACTGATGATGGTGCGGCTACATCAAGCTTCAAGTTAATGCACTCTAGTTGTTGTTATTTAAGTCAATGGCACAATGCTGTTTCAAAGGCAAGTGGTGTGACAAGCTGGCCtagttccagatctgtttgtgctggcttgccaatgaccataggagtgGACAAGACAGCACAAACGGGTCATTCTAGTGAGAAGCAAATGCAGGGCTGAAGAATCTACGGTATTACTTGAATCACGACCATTGGCGGTCAAGGAACACAATTACGCAATGTCATGTAGTACAAAAATCAGATGACAACATTCACAGTAGAAAAGTCAAGGATTACAAAGACGATTATTGTgacaaaacacagagacaaacaacACCATGTTGGGTGTTACTTCAGTCTGAAGAGCTACATGTTCAATGCTGTTTTTGATAGCATTAGCGTTCGTCTAGGTATAGCATATAGCAGGAAAAAATATTTCCTTTGTGTGCACGTCTACTCAATGCTAGAATGGAGGCGTTTTATCGAGAGCATTTAGAAACATTGCTTGTGATTGATACATAAATACAAATGTCAAAAGTACCACAAGTACATGAAAATACATTGCATGACCAAGTACATGTACTGTATTGTAAGAGGTAAAGGTAAAACTTTACAGTGGAATCATACCAAAGGACTAACTGGAGTATCATAAACAGAGGATAATGGCTCAATAACTTTCTGTACTTGCTAATAGTAACAGTTAATGCACTTGATACAGTACACAATAGGATACCTGATTCAATCCAACCCTGACAACCAGGTTTCCAAAACAAGTGAAAAACAACATTCTTTATTGACAATTCAAATTTCGTTCAGTTTCCTAATATCTGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1028810 False 2421 lncRNA 0.43 1 54907784 54910204
TU1028814 True 2558 lncRNA 0.42 1 54907784 54910341

Neighbor

gene id symbol gene type direction distance location
fam193a LOC106610017 coding downstream 127801 54750072 ~ 54779983 (-)
LOC118937069 NA coding downstream 184582 54723150 ~ 54723202 (-)
LOC100135808 LOC100135808 coding downstream 190125 54716329 ~ 54717659 (-)
sparcl1 LOC106602739 coding downstream 201926 54690069 ~ 54705858 (-)
LOC110534935 LOC106602741 coding downstream 218275 54681566 ~ 54689509 (-)
LOC110534316 NA coding upstream 66922 54976939 ~ 54985945 (-)
LOC110534319 LOC106602749 coding upstream 242195 55152536 ~ 55155586 (-)
dchs2 dchs2 coding upstream 266513 55176854 ~ 55230032 (-)
LOC110533147 LOC106602751 coding upstream 339163 55249504 ~ 55251281 (-)
cisd2 LOC106602754 coding upstream 528198 55438539 ~ 55443132 (-)
G904398 NA non-coding downstream 65439 54835605 ~ 54842345 (-)
G904397 NA non-coding downstream 72346 54835208 ~ 54835438 (-)
G904383 LOC106581475 non-coding downstream 111812 54795728 ~ 54795972 (-)
G904374 NA non-coding downstream 124925 54782542 ~ 54782859 (-)
G904372 NA non-coding downstream 126061 54781461 ~ 54781723 (-)
G904466 NA non-coding upstream 12545 54922886 ~ 54923099 (-)
G904801 NA non-coding upstream 26116 54936457 ~ 54936659 (-)
G904802 NA non-coding upstream 26742 54937083 ~ 54937287 (-)
G904795 LOC106602744 non-coding upstream 93275 55003616 ~ 55008982 (-)
cfap97 cfap97 other downstream 804379 54082166 ~ 54111277 (-)
G903619 primpol other downstream 1024011 53879544 ~ 53883773 (-)
casp3a LOC106602722 other downstream 1028995 53872239 ~ 53878829 (-)
G902519 NA other downstream 1979382 52902194 ~ 52937648 (-)
G900807 NA other downstream 3451842 51455500 ~ 51455942 (-)
G904991 NA other upstream 369158 55279499 ~ 55280341 (-)
LOC110534325 NA other upstream 617184 55527525 ~ 55528458 (-)
G905177 LOC106604999 other upstream 618525 55528866 ~ 55529192 (-)
G906663 NA other upstream 1809042 56690485 ~ 56751990 (-)
G908286 NA other upstream 2547899 57458240 ~ 57890617 (-)

Expression


Co-expression Network