G904633


Basic Information

Item Value
gene id G904633
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 55280514 ~ 55282713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1029022
tctggaagtttctcccatctccacaaaagaactctagagctctgtcagagtttttggtcacctgcctgattaaggcccttctccccgattgctcagtttggctgagcggacagctctaggaagagccttggtggttccaaactttttccatttaatgaaggagaccactgtgttcttgtggaccatcaatgctgcagaaatgttttgttacccttccccagatctgtgcctcgacacaatgctgtcttggagctctacggacaattccttcaccctcatggcttggattttgctctgacatgtactgtcaactgtgggaccttatatagacaggtgtgtgcttttccaaatcatgtccaatcaatttaattgaccacaggtggactccaatcaagttgtagaaacatctaaaggatgatcaatggaaacagggtgcacctgagttgaatttcgagtctcaaagcaaagggtctgaatacttatgtaagtaatgtatttctgttaattatttttaatacattgggtaacatttaaaaaatactgttttcactttgtaattgtGGGTTATTTTGTGTAGACGGCtgaggattttattttatttaatacattttagaataaggctgtaacaacaaaatgtggaaaaagtcaaggggtctgaatactttccgaaggcactgtatatgctgctcGAATAGCCTCACATTTGACTGTAAATCACATAGTATAATGACCTCTACCTTATGGTAATGCTTCCATTGTTAGTGTAACTATCCTCAGCTCCACATCCTTTTACTGCCGTGCTGTATTTGGCCATTAACTTTAATGTGTTTAGAGGCAAGAACTTATaggtgggagagaagagaggagttaAACAATTACCCATGATGACAGACGTAACACAGGGCATTAGGTCCTGTCTCACATCTCGTGGGAAGCCCCAGTATGAATCTCATTAATTAATCTATATTCTTCCTCAATTGCCTTGTCATTATTCAGATAAACCAGAGAAAGCCCTTTGGTTCAAATAATTGTcttgttaaagtttacatagtaATGAAGAAAGGGAAAAAAcgggtgtgtgcatgtgcatgtgcatgtgtgtgtgtgtgtgtctgtacgtgtatATTATTTTGCACTTCACATGAATGTTTGAAACCATTTTCCCCAGCAAAAAAAACATGTACAAGTACATTGCTTTACATGGTGACACCCTGGCTGCATTCTATCCAGTTCAAGGAAACATTTGATTGTTTATTCTAGCCTTGGTGTAGgccaaatgtgtgtgtgcgtgtttgattTCAGTGTGGGTATATGTTATCTGTGCAGATTTCTGCAGATGTGTACATTGCTTTTGTCATTAGACAAGTGtaggaaaatacattttcaacACTGAGTTTGTTACAGAGATGTGTAGGTAACTTCAGGACAAAGACTATGATAGAAAACAGCAAGAAAGAGTGATTACATCTCCCACCACCACTGTGGTAAAAACACAATTTATCAGTGATGGTATCGCACCTCTGCTGCACTGCCAGGGGGTCTACCCAGGAGATCCAAGCCATGGGACCAAAAAACTAAACAGATGGCGACAGAGCATAAATTGACAAtaaacataattgcattttatctatggttattttttttattttttttaaactctgtttattaagttttgaacatacacacatacagacaagacaaagcaatataaataatatactcaactagaaaaaaaatacataaaaatacaaataaaaaaatagctttaaagataccatactttagacaagttaaacacaccgggcagaaggctacagaggttaaagggcaatctatagtacagggacaggGCAAACatctcaccattgttcctgtaaacagtcaagggataagggtggagaaatgcaaccactcacagagagtcatagccacagaccgaccatccactggacaaaaaaaaagtttacaatgctttaaaataaaaaataaaaaattattattcatgtaggcgtgaacaaaatgtaaaaataactgggaaaaacaagctcacacttcagtctctgcctgggcaagatgaacaaggcatctgcggaccacaatcaataagcacatggaTCTTAATccccccccagcaaaaacacagagagaaactcccccaacccttaagtcacagacttattttagtattaattggaatgcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1029022 True 2200 lncRNA 0.39 1 55280514 55282713
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Neighbor

gene id symbol gene type direction distance location
cnga1a LOC106602752 coding upstream 3121 55266623 ~ 55277393 (+)
tmem131l LOC106602747 coding upstream 136964 55043454 ~ 55143550 (+)
LOC110534317 mnd1 coding upstream 238478 55015580 ~ 55042036 (+)
trim2a LOC106602744 coding upstream 265959 54948390 ~ 55014555 (+)
fhdc1 LOC106602742 coding upstream 370299 54845361 ~ 54910259 (+)
LOC110533148 tacr3 coding downstream 33737 55316450 ~ 55356923 (+)
LOC110534323 LOC106602753 coding downstream 131799 55414512 ~ 55436186 (+)
suclg1 LOC106602756 coding downstream 163181 55445894 ~ 55467323 (+)
LOC118936709 NA coding downstream 699919 55982632 ~ 55984568 (+)
LOC110534327 LOC106602758 coding downstream 890719 56173432 ~ 56177148 (+)
G904651 NA non-coding upstream 15418 55264604 ~ 55265096 (+)
G904646 NA non-coding upstream 23535 55256747 ~ 55256979 (+)
G904643 NA non-coding upstream 25523 55254774 ~ 55254991 (+)
G904639 LOC106602751 non-coding upstream 30301 55249880 ~ 55250213 (+)
G904636 NA non-coding upstream 34120 55245979 ~ 55246394 (+)
G904657 NA non-coding downstream 5927 55288640 ~ 55289062 (+)
G905169 NA non-coding downstream 242098 55524811 ~ 55525104 (+)
G905171 NA non-coding downstream 243597 55526310 ~ 55526540 (+)
G905174 LOC106611607 non-coding downstream 244992 55527705 ~ 55527920 (+)
G905178 LOC106611608 non-coding downstream 246944 55529657 ~ 55529883 (+)
G904621 LOC106567469 other upstream 49259 55230899 ~ 55231255 (+)
helt helt other upstream 1301242 53977386 ~ 53980090 (+)
G902840 LOC106602714 other upstream 1605703 53670120 ~ 53674811 (+)
G902707 NA other upstream 1760726 53516107 ~ 53519788 (+)
LOC110534253 hinfp other upstream 2744864 52532434 ~ 52542498 (+)
G904663 NA other downstream 12524 55295237 ~ 55296054 (+)
G906606 LOC100136012 other downstream 1373586 56656299 ~ 56656552 (+)
LOC110534329 LOC106602762 other downstream 1707291 56953710 ~ 56991150 (+)
LOC110534333 LOC106602771 other downstream 1870051 57142719 ~ 57206820 (+)
LOC110534354 NA other downstream 2385869 57645943 ~ 57671502 (+)

Expression

G904633 Expression in all Baseline Samples

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G904633 Expression in each Bioproject

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G904633 Expression in each Sample
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Co-expression Network