G911148 (LOC106602559)


Basic Information

Item Value
gene id G911148
gene name LOC106602559
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 60742304 ~ 60755677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1036220
CTATGGGGTAAGGGTTTTATTCGGCCTTGTTTAAATACTTTAAGAATgtttccttccttcctgcctggATAGTTAACCTACAGTATTGTGCTATAACTATTTACTTATACCTATCAATTAGTGTTAGATCAGCGATTACTcccgagggaggaaggaatggtCTGTTTTAAAGTATTCAAACAGTTCCCTAGATTATCTAGTGCTGCTGCTTCCTCTTCTCAAGTTTGATCCAGATGCCTTTCTCGGGGCGCAGTATGAGCTCCCCTAGTGGGCGGAGGTCCTCGCGCTTCTGACACGCCTCCACGTTGAAGTAGCGCAAGATGGACGCCAGGAtcaccttctcctccatcaCGGAGTCCAGCAGAGAAGGGGATGAAGGCATAAGGATGTCTCCCAACGCAGTTTTCCGGCATGAAGCGTTCCGGGCGGAACTCTTCAGGCTGGGGGAAGTGGCGCGGGTCGCGGTGAAGGGAGTAGGGCATGATGATGGCATTGGCACCTTTGGGAACCTTGAAACCATGATGTGGCAGTCTTCACAGATGCTGCGGGCGAAGAAGGGGACAGAGGGGAACAGGCGCAGGGACTCTTTGATGACACACTCCAGGTAGGGCAGCTTCTTCAGATCCTCTGTGTTTATTGGCCGGTCGGACACACCTGAGCACGGGGGGGTGCAAGACTGCAGGTTACATCCCATTATATATGTTCCGTGGTGTTGGGGCAATAGGACATAGCTATGAATGGGGGgggacccccccaaaaaatggatgTTACACCGTATTATGAATGTTCTGCGGTGATGGGGCAATCGGACACAGCTACGAATGGAGGTAGAGGAATGGATGTTATGTTCTTCTGTCGTCGATCATGGTAACTACACCGAACCTGCATCTACTGTCAAAGAGATACTCGTCATGGTAATATTGGAATGCTCGTTTGGATGCCAGGTCTGCCATGGCAGGGGTGGAAGGCATTCCAAAAACGCTTCACAAATCAGGCTATTACTGTATACAACAGCCAATTTTGATATGCCACAGAACCTAATTCAGttcattaaatacattttgcttTGGTGAGACTTTCCACACTTTCCCACTGTGATTGAACTCGCTTTGACCTGTGAGAGAaggatttgatttgaatcatgTGATAAGAGAAGCGAGTATAGTGACGGGAGACTATGGGATTAGAATTACCAAGTACTTCCTGCAGAACCTATGGTCTAGCAGTAATGCGTCCATCTTCTCTAAATACTTCTCCGAGatcagggttcaatcccagcatCTTCTCATTCTGACTGTCTCTCCCACTTACCAGTCACCATTGTCTAAATCAAGTGCAATAAAACTCATTCCACTGAGGGCCGAGTGGCTGTGGGGTTTTCACTCcgccttgtacttgattgatgaggAACTCCCCATACTGTACCTGGCTGTCTATGGCTTAACTGaaaggaaaaaaaactaaaacctgCAGaaactaggccctccatggaatgcgTTTGACTCTACTGCATACATAATGATAGAACCATGCAAGAAAATGTTGGattctgttgtttttttttaacttaaaATGGCCCCAAATAAGCAAATGTAAAATATTATTTAGGAGTGTTTTTTAA
>TU1036223
CTATGGGGTAAGGGTTTTATTCGGCCTTGTTTAAATACTTTAAGAATgtttccttccttcctgcctggATAGTTAACCTACAGTATTGTGCTATAACTATTTACTTATACCTATCAATTAGTGTTAGATCAGCGATTACTcccgagggaggaaggaatggtCTGTTTTAAAGTATTCAAACAGTTCCCTAGATTATCTAGTGCTGCTGCTTCCTCTTCTCAAGTTTGATCCAGATGCCTTTCTCGGGGCGCAGTATGAGCTCCCCTAGTGGGCGGAGGTCCTCGCGCTTCTGACACGCCTCCACGTTGAAGTAGCGCAAGATGGACGCCAGGAtcaccttctcctccatcacGGCAAATCGCTGACGATGCAGTTGCGGAGTCCAGCAGAGAAGGGGATGAAGGCATAAGGATGTCTCCCAACGCAGTTTTCCGGCATGAAGCGTTCCGGGCGGAACTCTTCAGGCTGGGGGAAGTGGCGCGGGTCGCGGTGAAGGGAGTAGGGCATGATGATGGCATTGGCACCTTTGGGAACCTTGAAACCATTGATGTGGCAGTCTTCACAGATGCTGCGGGCGAAGAAGGGGACAGAGGGGAACAGGCGCAGGGACTCTTTGATGACACACTCCAGGTAGGGCAGCTTCTTCAGATCCTCTGTGTTTATTGGCCGGTCGGACACACCTGAGCACGGGGGGGTGCAAGACTGCAGGTTACATCCCATTATATATGTTCCGTGGTGTTGGGGCCTGCATCTACTGTCAAAGAGATACTCGTCATGGTAATATTGGAATGCTCGTTTGGATGCCAGGTCTGCCATGGCAGGGGTGGAAGGCATTCCAAAAACGCTTCACAAATCAGGCTATTACTGTATACAACAGCCAATTTTGATATGCCACAGAACCTAATTCAGttcattaaatacattttgcttTGGTGAGACTTTCCACACTTTCCCACTGTGATTGAACTCGCTTTGACCTGTGAGAGAaggatttgatttgaatcatgTGATAAGAGAAGCGAGTATAGTGACGGGAGACTATGGGATTAGAATTACCAAGTACTTCCTGCAGAACCTATGGTCTAGCAGTAATGCGTCCATCTTCTCTAAATACTTCTCCGAGatcagggttcaatcccagcatCTTCTCATTCTGACTGTCTCTCCCACTTACCAGTCACCATTGTCTAAATCAAGTGCAATAAAACTCATTCCACTGAGGGCCGAGTGGCTGTGGGGTTTTCACTCcgccttgtacttgattgatgaggAACTCCCCATACTGTACCTGGCTGTCTATGGCTTAACTGaaaggaaaaaaaactaaaacctgCAGaaactaggccctccatggaatgcgTTTGACTCTACTGCATACATAATGATAGAACCATGCAAGAAAATGTTGGattctgttgtttttttttaacttaaaATGGCCCCAAATAAGCAAATGTAAAATATTATTTAGGAGTGTTTTTTAA
>TU1036225
CTATGGGGTAAGGGTTTTATTCGGCCTTGTTTAAATACTTTAAGAATgtttccttccttcctgcctggATAGTTAACCTACAGTATTGTGCTATAACTATTTACTTATACCTATCAATTAGTGTTAGATCAGCGATTACTcccgagggaggaaggaatggtCTGTTTTAAAGTATTCAAACAGTTCCCTAGATTATCTAGTGCTGCTGCTTCCTCTTCTCAAGTTTGATCCAGATGCCTTTCTCGGGGCGCAGTATGAGCTCCCCTAGTGGGCGGAGGTCCTCGCGCTTCTGACACGCCTCCACGTTGAAGTAGCGCAAGATGGACGCCAGGAtcaccttctcctccatcacGGCAAATCGCTGACCGCAGTTGCGGAGTCCAGCAGAGAAGGGGATGAAGGCATAAGGATGTCTCCCAACGCAGTTTTCCGGCATGAAGCGTTCCGGGCGGAACTCTTCAGGCTGGGGGAAGTGGCGCGGGTCGCGGTGAAGGGAGTAGGGCATGATGATGGCATTGGCACCTTTGGGAACCTTGAAACCATTGATGTGGCAGTCTTCACAGATGCTGCGGGCGAAGAAGGGGACAGAGGGGAACAGGCGCAGGGACTCTTTGATGACACACTCCAGGTAGGGCAGCTTCTTCAGATCCTCTGTGTTTATTGGCCGGTCGGACACACCTGAGCACGGGGGGGTGCAAGACTGCAGGTTACATCCCATTATATATGTTCCGTGGTGTTGGGGCCTGCATCTACTGTCAAAGAGATACTCGTCATGGTAATATTGGAATGCTCGTTTGGATGCCAGGTCTGCCATGGCAGGGGTGGAAGGCATTCCAAAAACGCTTCACAAATCAGGCTATTACTGTATACAACAGCCAATTTTGATATGCCACAGAACCTAATTCAGttcattaaatacattttgcttTGGTGAGACTTTCCACACTTTCCCACTGTGATTGAACTCGCTTTGACCTGTGAGAGAaggatttgatttgaatcatgTGATAAGAGAAGCGAGTATAGTGACGGGAGACTATGGGATTAGAATTACCAAGTACTTCCTGCAGAACCTATGGTCTAGCAGTAATGCGTCCATCTTCTCTAAATACTTCTCCGAGatcagggttcaatcccagcatCTTCTCATTCTGACTGTCTCTCCCACTTACCAGTCACCATTGTCTAAATCAAGTGCAATAAAACTCATTCCACTGAGGGCCGAGTGGCTGTGGGGTTTTCACTCcgccttgtacttgattgatgaggAACTCCCCATACTGTACCTGGCTGTCTATGGCTTAACTGaaaggaaaaaaaactaaaacctgCAGaaactaggccctccatggaatgcgTTTGACTCTACTGCATACATAATGATAGAACCATGCAAGAAAATGTTGGattctgttgtttttttttaacttaaaATGGCCCCAAATAAGCAAATGTAAAATATTATTTAGGAGTGTTTTTTAA
>TU1036227
CTATGGGGTAAGGGTTTTATTCGGCCTTGTTTAAATACTTTAAGAATgtttccttccttcctgcctggATAGTTAACCTACAGTATTGTGCTATAACTATTTACTTATACCTATCAATTAGTGTTAGATCAGCGATTACTcccgagggaggaaggaatggtCTGTTTTAAAGTATTCAAACAGTTCCCTAGATTATCTAGTGCTGCTGCTTCCTCTTCTCAAGTTTGATCCAGATGCCTTTCTCGGGGCGCAGTATGAGCTCCCCTAGTGGGCGGAGGTCCTCGCGCTTCTGACACGCCTCCACGTTGAAGTAGCGCAAGATGGACGCCAGGAtcaccttctcctccatcacGGCAAATCGCTGACCGATGCAGTTGCGGAGTCCAGCAGAGAAGGGGATGAAGGCATAAGGATGTCTCCCAACGCAGTTTTCCGGCATGAAGCGTTCCGGGCGGAACTCTTCAGGCTGGGGGAAGTGGCGCGGAACGAGGAAGGGTACTGGTCCGATCCAAATCTTCAACAGTGGGGAGTCCCTGAACTGCTCTGTGTAGCCAATGACTTGACGGAAGAActccggCGTTGGATTTGAACTGCAGTGCGTTCCCTATGAGGGGGTATGTGCCTTCAATCTCTGGTATGGGCTTCATCTCCCTCCATTTATACAGATAACTGCTGAGTAGCTGGTAGGTGGCGTAGGTCAGCATTGAAACGAAGAGGCTCACCCCCAGCAGCCCCAACGTGTAAGCCCCCAAAACTATCGCCATCTCTGGGTAGTACGTGGCCTTAACAACCTCCAAATGAATGTCTGAGACCTGCTGGCTA
>TU1036224
TGCTGATCagtaattatttgttattcttctcttttttgggggtattttcttaaaactgcattgttggttaagggcttgtaagtaagcatttcattgtaaggttgtattcggcgcatgtgacaaatacgttGATTTTGATTTAGTATTCAATACAGTCTGTGTTTGCATTGGTACGCTTAAACCCAAAACAGCAGGCCAGAATGGGTTTTGATATTTGATAGCAGTAACCATATATCGGTTGTCAGGCTACCTGTATGTGGTGTAATTACTAACTTATTTATGGAGAGTAGATTTCCATCTCCGGAGTGAAACGATGTAGTGTTCAGTAGACAGAAATGTTGAGGTTTCAAAACAAGTGTGACAACTTGTATGTGTCACCCTATTTAAACATTTTGCAAAACATTCAGGTGTTATGCATCAAGTTGATTCAAGTCAATTCTTTGATTAATAGCCTACCTCAATGGTTTCTGCATGGAACAGAACGAGGAAGGGTACTGGTCCGATCCAAATCTTCAACAGTGGGGAGTCCCTGAACTGCTCTGTGTAGCCAATGACTTGACGGAAGAAATctccggCGTTGGATTTGAACTGCAGTGCGTTCCCTATGAGGGGGTATGTGCCTTCAATCTCTGGTATGGGCTTCATCTCCCTCCATTTATACAGATAACTGCTGAGTAGCTGGTAGGTGGCGTAGGTCAGCATTGAAACGAAGAGGCTCACCCCCAGCAGCCCCAACGTGTAAGCCCCCAAAACTATCGCCATCTCTGGGTAGTACGTGGCCTTAACAACCTCCAAATGAATGTCTGAGACCTGCTGGCTA
>TU1036221
caagtggtgatcttaactgacctaagacagggaatttttacctggattaaatgtcaggaatgatgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccaacttcaactgtatgtaggtAGATTGGGAGAGCAATGAATGACTGAATGATTGAGTGAGTGTTCGAAGCTCCCCTCCCTAAACTACTGTCCTCTcgtctctcttcccttctcctcggTCCTCTCTTCCCACGTCTCCTCTCCTTGCTCAATTCCGGCATTGAACTACAGTGCGATCCCTATGAGGGGGTATGTGCCTTCAATCTCTGGTATGGACTTCctctcctctctcacctccggCGTTGGATTTGAACTGCAGTGCGTTCCCTATGAGGGGGTATGTGCCTTCAATCTCTGGTATGGGCTTCATCTCCCTCCATTTATACAGATAACTGCTGAGTAGCTGGTAGGTGGCGTAGGTCAGCATTGAAACGAAGAGGCTCACCCCCAGCAGCCCCAACGTGTAAGCCCCCAAAACTATCGCCATCTCTGGGTAGTACGTGGCCTTAACAACCTCCAAATGAATGTCTGAGACCTGCTGGCTA
>TU1036222
caagtggtgatcttaactgacctaagacagggaatttttacctggattaaatgtcaggaatgatgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccaacttcaactgtatgtaggtAGATTGGGAGAGCAATGAATGACTGAATGATTGAGTGAGTGTTCGAAGCTCCCCTCCCTAAACTACTGTCCTCTcgtctctcttcccttctcctcggTCCTCTCTTCCCACGTCTCCTCTCCTTGCTCAATTCCGGCATTGAACTACAGTGCGATCCCTATGAGGGGGTATGTGCCTTCAATCTCTGGTATGGACTTCATCTCCCTCCATTTATACAGATAACTGCTGAGTAGCTGGTAGGTGGCGTAGGTCAGCATTGAAACGAAGAGGCTCACCCCCAGCAGCCCCAACGTGTAAGCCCCCAAAACTATCGCCATCTCTGGGTAGTACGTGGCCTTAACAACCTCCAAATGAATGTCTGAGACCTGCTGGCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1036220 False 1621 TUCP 0.46 3 60742304 60744613
TU1036223 False 1484 TUCP 0.46 4 60742304 60744613
TU1036225 False 1482 TUCP 0.46 4 60742304 60744613
TU1036227 False 822 lncRNA 0.51 4 60742304 60755677
TU1036224 False 820 lncRNA 0.43 2 60747629 60755677
TU1036221 False 594 lncRNA 0.48 2 60753354 60755677
TU1036222 True 506 lncRNA 0.47 2 60753354 60755677
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534410 LOC106602558 coding upstream 825 60678374 ~ 60741479 (+)
LOC110534409 LOC106602556 coding upstream 408165 60236165 ~ 60334139 (+)
LOC118937067 NA coding upstream 769145 59973104 ~ 59973159 (+)
LOC110534405 LOC106602553 coding upstream 1045229 59659610 ~ 59697075 (+)
LOC110534404 LOC106602550 coding upstream 1093799 59641980 ~ 59648505 (+)
sorbs2a LOC106602561 coding downstream 51472 60807149 ~ 60912819 (+)
LOC110534414 alp coding downstream 158666 60914343 ~ 60927020 (+)
si:dkey-256e7.8 LOC106602637 coding downstream 172049 60927726 ~ 60931517 (+)
LOC110534419 LOC106602564 coding downstream 239501 60995178 ~ 61001444 (+)
LOC110534418 LOC106602566 coding downstream 248559 61004236 ~ 61032099 (+)
G911153 NA non-coding upstream 3892 60737941 ~ 60738412 (+)
G911152 NA non-coding upstream 5272 60728951 ~ 60737032 (+)
G911151 NA non-coding upstream 60750 60681240 ~ 60681554 (+)
G911143 NA non-coding upstream 65810 60676245 ~ 60676494 (+)
G911141 NA non-coding upstream 68834 60673233 ~ 60673470 (+)
G911163 LOC100136342 non-coding downstream 2684 60758361 ~ 60760576 (+)
G911198 NA non-coding downstream 47907 60803584 ~ 60803807 (+)
G911244 NA non-coding downstream 108644 60864321 ~ 60922002 (+)
G911288 NA non-coding downstream 216948 60972625 ~ 60972888 (+)
G911289 NA non-coding downstream 217303 60972980 ~ 60973202 (+)
G909581 NA other upstream 1103606 59624751 ~ 59638698 (+)
LOC110534399 LOC106602650 other upstream 1198724 59540280 ~ 59544449 (+)
LOC110534381 cldnd other upstream 1333361 59401708 ~ 59408944 (+)
ankrd49 LOC106602680 other upstream 2224329 58456982 ~ 58517975 (+)
LOC110534354 NA other upstream 3070848 57645943 ~ 57671502 (+)
LOC110533174 LOC106602527 other downstream 395587 61146124 ~ 61185835 (+)
G911611 LOC106609905 other downstream 810680 61566357 ~ 61569062 (+)
si:dkey-9i23.4 LOC106596523 other downstream 894080 61649733 ~ 61659500 (+)
G911652 NA other downstream 901650 61657327 ~ 61658426 (+)
G911667 NA other downstream 935592 61691269 ~ 61691638 (+)
G911159 NA non-coding downstream 8113 60752726 ~ 60802539 (+)

Expression

G911148(LOC106602559) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G911148(LOC106602559) Expression in each Bioproject

Bar chart with 19 bars.
G911148(LOC106602559) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 7500.
End of interactive chart.

Co-expression Network