XLOC_002810 (znhit2)


Basic Information

Item Value
gene id XLOC_002810
gene name znhit2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26982254 ~ 26985231 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005207
AACTTGCGACGAGTAACGTCATTCTATCGTGTACGGCGGTCTAAAAGCATATTTATAAACACGCGTTGTTGAAAATAtccttacatttttttcattctcCGAATGTGTCTGGGAACGGTACCTATGCACTCATCAAGATCATTACCGCTACACAAACACATCAGTGAATGAGCTTCTCATGGATCCTGTTGTCAGACGTAAAATCCCTGCGTGTGTTCGTTCGTTACTCACCGACATCACACCAAAGCAGGAGGAAAACCTGAGCGACTGGCCAGAAACACACTCTGAATCAATTACCAGCAAAGATGGGATCGCACTCCCCAAGAGAGGCACTTCTGAAACTCTCCTCACCCCTGCCAACAGTACAGAAGGGGCAACCACAGACGGAAATCCCTCATCAATCAAACCATGTGGACTTTGCTTAATAAAACCGTCTTCTTACACCTGCCCAAGGTGCAACATCCCGTATTGCGGTTTAGCTTGTTACAAGAGTCAGAGTCACTCCAAATGCTCGGAGGAGTTTTACAAGGAGTCTGTGCTCCAGGAGCTCAAATCCAGAGGAGCCACAGATGAAGAGGGGAAGAGCAAGATGCAGGAGATCCTCCTCCGGCTCAGACAGAGCGCAGACACTGAGGGCGGGATGCAGAACTTCTTAGGACACTTAGATGGAACCAATGTGACTGAAGGAGACGCACAGGCTTTGGATCTGCTTTGCAAGTTGGCAGAGCTTCAGTCTGGTGGAGATGAAAACAGTCACGAGGCACAAGAAATCCTGGCAAAACTTGAGGAAgccgatgatgatgatgatgatgatgatgaagatttaGCTGAGAAGTTAGCTGGATTGGATGTTGATTCTCTTTCTGAAGAGCAGCTCTGGTCATTGTTGTCCACCCAGGAGAAGGAGAAATTTGAGAATCTGCTAAAAGTTGGTGGCATCGCTGGGATGGTTGTCCTGTGGAGACCCTGGTGGGAGCAACATGAGAAAGAAACTAAAACCCTGATTGAAGAACTTCGCTTTGAAAATCAAGTAGAAGTGCGCACTGCGAAAAAAGGAAAACCCCAAAAAGTTGCTAGCGATGCTAAACAATCAGCAGTTCCTCCAATAAGTGCTAAAATCCCCCCTCTTCACAGGCTAACATCAAATCCGTCTCCTCTAGTGCAGTTCAATCTGATCAACGCTCTTTACGGATACACTTTCTCTCTGTGTCTCTTCAATGGAGATATTTCCGACACATTGCTGGAGTTTAGTCAGGCGCTGGTTTCCATTTCAGAGTTCTTGGGTGCTGGACGGGTCTTTAACTCTGTCCCGGAGGCTCTTGATGCTGGGATTAGATCTGTATCTGCTGGTGGATATTTCGACAGAGAAGACTCTTCAGCTCCTATTCGAGCTGTGGAAGCGGTGGCTCATGTGTTGACGGGACGGAGCAGAGAGGACGCTGAGGGATACACACTGTCTGCTTTGTCGCAGGTGCGCTCGGCATTGAGCAAGGCAAAGATGGCTGCTGCTACAGATGATGACGAGAGGATGAGACAGGGTTTTTTTCAAGCTGGAAAGAAGTGCGAGTTCTTTCAGTCTTGGGTGAAGGAGAATCCTGAGGTTTTGAGGAGATTGGCTGGAAGTGTGTGGACGGACTTTGAGAGAAGGGAGGTGGAGAGAGAGACATTAGAAGAGGACAGGAAACTGCTGGACGAAGCACGGGGGAAAAGTAGAGGTAAAGGTGCACTGATAGAAGAGGTTGAGTGAGATTGTGATGTGTGATTGTTTAAAGTAAAGAAATTGTTCATGA

Function

symbol description
znhit2 Predicted to enable metal ion binding activity. Orthologous to human ZNHIT2 (zinc finger HIT-type containing 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-46 Predicted to enable metal ion binding activity. Orthologous to human ZNHIT2 (zinc finger HIT-type containing 2).

Ensembl:

ensembl_id ENSDARG00000030805

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005207 True 1790 mRNA 0.47 2 26982254 26985231

Neighbor

gene id symbol gene type direction distance location
XLOC_002809 NA coding downstream 79949 26901272 ~ 26902305 (-)
XLOC_002808 CR545465.2 coding downstream 87178 26892567 ~ 26895076 (-)
XLOC_002807 NA coding downstream 109841 26836836 ~ 26872413 (-)
XLOC_002806 mcf2b coding downstream 188806 26771047 ~ 26793448 (-)
XLOC_002805 mcf2b coding downstream 215474 26762793 ~ 26766780 (-)
XLOC_002811 MRPL49 coding upstream 1877 26987108 ~ 26989875 (-)
XLOC_002812 zgc:193742 coding upstream 6574 26991805 ~ 26999496 (-)
XLOC_002813 NA coding upstream 15331 27000562 ~ 27002614 (-)
XLOC_002814 uqcc3 coding upstream 21035 27006266 ~ 27009584 (-)
XLOC_002815 cnih2 coding upstream 42788 27028019 ~ 27049170 (-)
XLOC_002802 NA non-coding downstream 535083 26441052 ~ 26447171 (-)
XLOC_002793 NA non-coding downstream 1290584 25690872 ~ 25691670 (-)
XLOC_002816 NA non-coding upstream 172706 27157937 ~ 27162145 (-)
XLOC_002817 BX248510.3 non-coding upstream 184725 27169956 ~ 27170072 (-)
XLOC_002819 AL844197.1 non-coding upstream 429015 27414246 ~ 27414362 (-)
XLOC_002823 NA non-coding upstream 1212685 28197916 ~ 28291989 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_12552338_12553936 NA coding CI01000304 null 12552280 ~ 12553936 (-)