XLOC_002814 (uqcc3)


Basic Information

Item Value
gene id XLOC_002814
gene name uqcc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27006266 ~ 27009584 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005212
ACAATGGTTAATAACGTAAGCTTCCTTTTCAGTGTTTTGTCCCACAATGGTTTGTGACCAGTCTGCCAGACCATCAACCGGTTAAAAAAGTTGTATAAGAAGAAGCATTCCCATAATGCACCGCACTGTGTCAAGCACAGACTGGTGTCAGTGTGACAGTGTGCTGAAAAACTGACCTAGCTTTTCCCCGCGATCCTTTATAGATTAGGGAAAGTTAGTTTTGCACATATTTCGTGCAGATCATGAGCGGCATGAGGATCCTCACGGGCTCCGTCGCGCTGGGCGGACTCACATACGCCATATGGATCATATTTTCCCCTGGAGAGGAGAGGAAAAAGGAGATATTAAAGAGTCTACCTGAAGCCAATCCAGTCCGAATGGAAGAGACCAGGAAAAGAAATGCCATCATGCTTCAGGTTTTAAAGGATGCTGCAGAGACCAATGATAACATTGCACGTGGATTTGGGAGCCAGAAATGATGGAACCAGATATCACAATCATGATGGGGAGAGAAAAATATGGAAACGGTGATTTATTGAAATAAATTGTATGGAAACTCATGTCATGTGCATTACTTCATGGACACTCATGCTAAACGACGTCCTGCAAGATTtgttttgctttagttttcttgAAGAATATTTGTCTTTTTGGGCCTTGTTCACACCTTGAGACATGCTATAGCTGGTTTGTGGCCTGTCCATAACCCACAGTTTTCTGTGAATGAAAGCACTGTTGTTTTACTgttgatgttgtttatttatgcttataAAAATGTTGATGAGGATTGTACTGCAAATAAAACTTAAACAAGTGG
>TCONS_00005213
AATGCACCGCACTGTGTCAAGCACAGACTGGTGTCAGTGTGACAGTGTGCTGAAAAACTGACCTAGCTTTTCCCCGCGATCCTTTATAGATTAGGGAAAGTTAGTTTTGCACATATTTCGTGCAGATCATGAGCGGCATGAGGATCCTCACGGGCTCCGTCGCGCTGGGCGGACTCACATACGCCATATGGATCATATTTTCCCCTGGAGAGGAGAGGAAAAAGGAGATATTAAAGATGCTGCGCATGTGCTCGTGTTCAAGGAGCGAATATAGAGAGTCTACCTGAAGCCAATCCAGTCCGAATGGAAGAGACCAGGAAAAGAAATGCCATCATGCTTCAGGTTTTAAAGGATGCTGCAGAGACCAATGATAACATTGCACGTGGATTTGGGAGCCAGAAATGATGGAACCAGATATCACAATCATGATGGGGAGAGAAAAATATGGAAACGGTGATTTATTGAAATAAATTGTATGGAAACTCATGTCATGTGCATTACTTCATGGACACTCATGCTAAACGACGTCCTGCAAGATTtgttttgctttagttttcttgAAGAATATTTGTCTTTTTGGGCCTTGTTCACACCTTGAGACATGCTATAGCTGGTTTGTGGCCTGTCCATAACCCACAGTTTTCTGTGAATGAAAGCACTGTTGTTTTACTgttgatgttgtttatttatgcttataAAAATGTTGATGAGGATTGTACTGCAAATAAAACTTAAACAAG
>TCONS_00005214
TGAATCCTCGCGTCATTGATTGTAAACAGTCAGTTTCATAACAGATGCTGCGCATGTGCTCGTGTTCAAGGAGCGAATATAGAGgaaaccggagaacccggggaaaacccacgcggacacgggaaggacatacaaactccccacagaaacacccaccggtcctatggaactaggaccggcagtattcttgctgtgtggttcgcagtgctaaccactggaccgccgtgccgcccaatcacagAGTCTACCTGAAGCCAATCCAGTCCGAATGGAAGAGACCAGGAAAAGAAATGCCATCATGCTTCAGGTTTTAAAGGATGCTGCAGAGACCAATGATAACATTGCACGTGGATTTGGGAGCCAGAAATGATGGAACCAGATATCACAATCATGATGGGGAGAGAAAAATATGGAAACGGTGATTTATTGAAATAAATTGTATGGAAACTCATGTCATGTGCATTACTTCATGGACACTCATGCTAAACGACGTCCTGCAAGATTtgttttgctttagttttcttgAAGAATATTTGTCTTTTTGGGCCTTGTTCACACCTTGAGACATGCTATAGCTGGTTTGTGGCCTGTCCATAACCCACAGTTTTCTGTGAATGAAAGCACTGTTGTTTTACTgttgatgttgtttatttatgcttataAAAATGTTGATGAGGATTGTACTGCAAATAAAACTTAAACA
>TCONS_00005215
CTGACCTAGCTTTTCCCCGCGATCCTTTATAGATTAGGGAAAGTTAGTTTTGCACATATTTCGTGCAGATCATGAGCGGCATGAGGATCCTCACGGGCTCCGTCGCGCTGGGCGGACTCACATACGCCATATGGATCATATTTTCCCCTGGAGAGGAGAGGAAAAAGGAGATATTAAAGTTTCATAACAGATGCTGCGCATGTGCTCGTGTTCAAGGAGCGAATATAGAGAGTCTACCTGAAGCCAATCCAGTCCGAATGGAAGAGACCAGGAAAAGAAATGCCATCATGCTTCAGGTTTTAAAGGATGCTGCAGAGACCAATGATAACATTGCACGTGGATTTGGGAGCCAGAAATGATGGAACCAGATATCACAATCATGATGGGGAGAG

Function

symbol description
uqcc3 Predicted to enable cardiolipin binding activity and phosphatidic acid binding activity. Predicted to be involved in cristae formation; mitochondrial electron transport, ubiquinol to cytochrome c; and mitochondrial respiratory chain complex III assembly. Predicted to act upstream of or within ATP biosynthetic process. Predicted to be located in mitochondrion. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 9. Orthologous to human UQCC3 (ubiquinol-cytochrome c reductase complex assembly factor 3).

GO:

id name namespace
GO:0042407 cristae formation biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0034551 mitochondrial respiratory chain complex III assembly biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005750 mitochondrial respiratory chain complex III cellular_component
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0070300 phosphatidic acid binding molecular_function
GO:1901612 cardiolipin binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030131-8451 Predicted to enable cardiolipin binding activity and phosphatidic acid binding activity. Predicted to be involved in cristae formation; mitochondrial electron transport, ubiquinol to cytochrome c; and mitochondrial respiratory chain complex III assembly. Predicted to act upstream of or within ATP biosynthetic process. Predicted to be located in mitochondrion. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 9. Orthologous to human UQCC3 (ubiquinol-cytochrome c reductase complex assembly factor 3).

Ensembl:

ensembl_id ENSDARG00000093382

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005212 False 817 mRNA 0.41 2 27006266 27009584
TCONS_00005213 False 740 mRNA 0.42 3 27006269 27009470
TCONS_00005214 False 703 processed_transcript 0.43 3 27006271 27009124
TCONS_00005215 True 392 mRNA 0.47 3 27006571 27009413

Neighbor

gene id symbol gene type direction distance location
XLOC_002813 NA coding downstream 3652 27000562 ~ 27002614 (-)
XLOC_002812 zgc:193742 coding downstream 6770 26991805 ~ 26999496 (-)
XLOC_002811 MRPL49 coding downstream 16391 26987108 ~ 26989875 (-)
XLOC_002810 znhit2 coding downstream 21035 26982254 ~ 26985231 (-)
XLOC_002809 NA coding downstream 103961 26901272 ~ 26902305 (-)
XLOC_002815 cnih2 coding upstream 18435 27028019 ~ 27049170 (-)
XLOC_002816 NA coding upstream 148353 27157937 ~ 27162145 (-)
XLOC_002817 BX248510.3 coding upstream 160372 27169956 ~ 27170072 (-)
XLOC_002818 auts2a coding upstream 173120 27182704 ~ 27741809 (-)
XLOC_002819 AL844197.1 coding upstream 404662 27414246 ~ 27414362 (-)
XLOC_002808 CR545465.2 non-coding downstream 111190 26892567 ~ 26895076 (-)
XLOC_002807 NA non-coding downstream 133853 26836836 ~ 26872413 (-)
XLOC_002802 NA non-coding downstream 559095 26441052 ~ 26447171 (-)
XLOC_002823 NA non-coding upstream 1188332 28197916 ~ 28291989 (-)
XLOC_002824 NA non-coding upstream 1237251 28246835 ~ 28248743 (-)

Expression


Co-expression Network