G924624 (LOC106595897)


Basic Information

Item Value
gene id G924624
gene name LOC106595897
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74652068 ~ 74941691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1051716
GCTCTACGTGGTTCAACACTCGGcggtccgttctgtgagcttgtgttgtctaccacttcacggctgtgCCGTTGTTGCTCCGAGATTTTCCACGTTGAAATTCACTGACATCTTCAGTAAGGACAGTTTTCTgccgatgtttgtctatggagattacatggctgtgtgcttaattttagacacttgtcagcaacaggtgtgactgaaatagccgaatccactgaAGTCAACATACTGTTGGCAATATAGTGTATCTTGTTAttacctgagcagatcactgtgagtccaggaagGAGATCATAACTTCTCCAACACTCCCTCAGTGAAGACTCAGACCCAGGACATCTAACTCCAAACCCTCTAGTGGTGTTTCCAGGTAGTGCTGAAACAGTGGAGCCACAACCCATCTGTCTACACACAACTGCAGCTACATCCCTCTGGTCCCTGTCATCAGCTCCCACAatcctccactctccctggtcgtaccactccactccaccagcacagcgactgcctcctcccaccagcctcacatcatcaggctctgagaaaagaaaagagagagacagtaatcttactattttctcactaaaacacacctatattgtctctcgtattcttcactccaggtgagaaacaatgttgattgagtgacaaactgtttcttacctgagcaggtgagtccaacagcattaccaggtaggcaggtgttgttctctctgtctgaggtgtcacagtccaggagaagggactcattacctttacactggaactctttatcccaggtctgaccctcaccttctccatagagccccccctgtagagctgcaggagccCCACAGCCAAACTCCCCACAGACTACCTCTGCATCCTGCCGGTCAAAGtcagcttcacacactgaggcccaggactgattggacttcacctccactctcccagagcagagaccag
>TU1051717
ctctgtctgaggtgtcacagtccaggagaagggactcattacctttacactggaactctttatcccaggtctgaccctcaccttctccatagagccccccctgtagagctgcaggagccCCACAGCCAAACTCCCCACAGACTACCTCTGCATCCTGCCGGTCAAAGtcagcttcacacactgaggcccaggactgattggacttcacctccactctcccagagcagagaccag

Function

NR:

description
PREDICTED: scavenger receptor cysteine-rich type 1 protein M130-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1051716 False 951 lncRNA 0.49 2 74652068 74941691
TU1051717 True 234 lncRNA 0.56 2 74850009 74941691

Neighbor

gene id symbol gene type direction distance location
LOC118936935 LOC106610453 coding upstream 18788 74629489 ~ 74633280 (+)
LOC110534587 LOC106610436 coding upstream 252060 74372867 ~ 74400008 (+)
LOC110534573 NA coding upstream 589135 74060319 ~ 74062933 (+)
LOC118936762 NA coding upstream 644252 73987940 ~ 74007816 (+)
LOC110497264 LOC106602228 coding upstream 741953 73860326 ~ 73910115 (+)
LOC110516094 NA coding downstream 291746 75233437 ~ 75240014 (+)
LOC118966655 LOC106609853 coding downstream 321431 75263122 ~ 75267375 (+)
LOC118936769 NA coding downstream 349280 75290971 ~ 75302295 (+)
LOC110516474 LOC106595897 coding downstream 361276 75302967 ~ 75306664 (+)
LOC110512116 LOC106591540 coding downstream 372689 75314380 ~ 75389957 (+)
G924368 NA non-coding upstream 152012 74457755 ~ 74500056 (+)
G924361 NA non-coding upstream 213955 74429293 ~ 74438113 (+)
G924279 NA non-coding upstream 441883 74204553 ~ 74210185 (+)
G923920 NA non-coding upstream 504117 74147723 ~ 74147951 (+)
G923919 NA non-coding upstream 506105 74145652 ~ 74145963 (+)
G924737 NA non-coding downstream 23537 74965228 ~ 75036195 (+)
G924738 NA non-coding downstream 26295 74967986 ~ 74969468 (+)
G924739 LOC106594592 non-coding downstream 27517 74969208 ~ 74990124 (+)
G924657 NA non-coding downstream 59247 75000938 ~ 75001582 (+)
G924747 NA non-coding downstream 86814 75028505 ~ 75029401 (+)
G923659 NA other upstream 971183 73483851 ~ 73680885 (+)
G923434 NA other upstream 1436610 73214487 ~ 73215458 (+)
G923430 NA other upstream 1448544 73200947 ~ 73203524 (+)
LOC118936484 LOC106602173 other upstream 1779266 72856302 ~ 72879600 (+)
G923075 LOC106610393 other upstream 1885849 72764442 ~ 72766219 (+)
G924772 NA other downstream 162926 75104617 ~ 75104970 (+)
G924787 NA other downstream 245564 75187255 ~ 75189231 (+)
G924816 LOC106601384 other downstream 300781 75242472 ~ 75243001 (+)
LOC110511403 LOC106610548 other downstream 481793 75423434 ~ 75481518 (+)
G924916 NA other downstream 581667 75523358 ~ 75525800 (+)

Expression


Co-expression Network