G925075


Basic Information

Item Value
gene id G925075
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74843007 ~ 75031349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1052365
tattgttggattagcagtgtttatatagtacagacacctagcactattgttggattagcagtgtttatatagtacagacacctagcactattgttggattagcagtgtttatatagtacagacatctacactattgttgtattagcagtgtttatatagtacaggcacctagcactattgttgtattagcagtgtttatatagtacagacacctagcactattgttggattagcagtgtttatatagtacagacacctagcactattgttgtattagtagtgtttatatagtacagacacctagcactattgttggattagcagtgtttatatagtacagacacctagcactattgttgtattagtagtgtttatatagtacaaacacctagcactattgttgtattagcagtgtttatatagttcAGGCACCTGGTGGAACCAACTTCACATCGCCCCCCAGAAGAAAGGCACACGGACACCCACACTTCAGGTTGACTCAGTTTTTATCTGCAGTAAAAGATAACAAACAGTGATGACAGGCATTGACAGGACAgacacaagatatctgttagataggagcaacagtagtgatacatggttaggtaggacacaatatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaatatatctgttagataggagcaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtaaCGTTAGTGATACAAACCCTCAATGTGAAGTGATATTAATCCATAAATACAGAGCACAAGTACAACCCTTTTATATAAACCTTTTAAGGTAGTAAGAAAATAAACATTCACTTAATATTTCAATAAGTCACCTGCTAGTAAATCACC
>TU1052360
atatattagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagaCAGGAGCAACAATAGtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgacacatggttaggtaggacacaatatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtaaCGTTATTGATACAAACCCTCAATGTGAAGTGATATTAATCCATAAATACAGAGCACAAGTACAACCCTTTTATATAAACCTTTTACGGTAGTAAGAAAATAAACATTAACTTAATATTTCAACAAGTCACCTGCTAGTAAATCACCTGCTGGTAATAACTAGCGTGACATTGTAGTGCAGAGACCAACAGTGCTCGTTAGCTCGTCATTAACACGGCTAGCTAAGACAGCAACAACTTGGTTAACTGGCTGAAATAGGTCTTCAATTCATGAACGGCTAAATACATATCTACAGAGCCACATTCGCTATTGACTTTAGGATATATGAACCAGTTTTCCAAAACCACTATGGTGTTATACAGTTTGAAACAGTTTTTATGTACAGAGGAAGAGGACTCGAACCTGCTCTCAGAATATCT
>TU1052362
atatattagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagaCAGGAGCAACAATAGtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaatatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagataggagcaacagtagtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtaaCGTTATTGATACAAACCCTCAATGTGAAGTGATATTAATCCATAAATACAGAGCACAAGTACAACCCTTTTATATAAACCTTTTACGGTAGTAAGAAAATAAACATTAACTTAATATTTCAACAAGTCACCTGCTAGTAAATCACCTGCTGGTAATAACTAGCGTGACATTGTAGTGCAGAGACCAACAGTGCTCGTTAGCTCGTCATTAACACGGCTAGCTAAGACAGCAACAACTTGGTTAACTGGCTGAAATAGGTCTTCAATTCATGAACGGCTAAATACATATCTACAGAGCCACATTCGCTATTGACTTTAGGATATATGAACCAGTTTTCCAAAACCACTATGGTGTTATACAGTTTGAAACAGTTTTTATGTACAGAGGAAGAGGACTCGAACCTGCTCTCAGAATATCT
>TU1052357
atatattagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagaCAGGAGCAACAATAGtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgacacatggttaggtaggacacaatatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtaaCGTTAGTGATTCAAACCCTCAATGTGAAGTGATAT
>TU1052356
atatattagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagaCAGGAGCAACAATAGtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagataggaacaacagtaaCGTTATTGATACAAACCCTCAATGTGAAGTGATATTAATCTATAAATACAGAGCACAAGTACAACCCTTTTATA
>TU1052364
atatattagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagaCAGGAGCAACAATAGtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtaaCGTTATTGATACAAACCCTCAATGTGAAGTGATATTAATCTATAAATACAGAGCACAAGTACAACCCTTTTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1052365 False 949 lncRNA 0.36 3 74843007 75031349
TU1052360 False 920 lncRNA 0.37 5 74962316 75030753
TU1052362 False 1026 lncRNA 0.37 5 74962316 75030753
TU1052357 False 590 lncRNA 0.37 4 75001023 75030753
TU1052356 False 629 lncRNA 0.37 3 75029913 75030753
TU1052364 True 258 lncRNA 0.35 2 75029913 75030753

Neighbor

gene id symbol gene type direction distance location
LOC110518241 LOC106592562 coding downstream 74844 74765988 ~ 74768163 (-)
LOC110497259 NA coding downstream 82359 74758689 ~ 74760648 (-)
LOC118936766 NA coding downstream 135283 74696063 ~ 74707724 (-)
LOC118936765 LOC106592562 coding downstream 166181 74674780 ~ 74676826 (-)
LOC118966653 NA coding downstream 729390 74112748 ~ 74113617 (-)
LOC110516473 LOC106591540 coding upstream 4381 75035730 ~ 75085676 (-)
LOC118936366 LOC106566139 coding upstream 22455 75053116 ~ 75056174 (-)
LOC118936693 LOC106592283 coding upstream 104775 75136124 ~ 75201466 (-)
LOC118936770 LOC105006021 coding upstream 372294 75403643 ~ 75412894 (-)
LOC110511405 NA coding upstream 460191 75491540 ~ 75494143 (-)
G925053 NA non-coding downstream 1122 74781693 ~ 74841885 (-)
G925071 NA non-coding downstream 10347 74831629 ~ 74832660 (-)
G925069 NA non-coding downstream 19707 74822993 ~ 74823300 (-)
G925010 NA non-coding downstream 34153 74807646 ~ 74808854 (-)
G925026 NA non-coding downstream 46154 74706338 ~ 74796853 (-)
G925014 NA non-coding upstream 28940 75060289 ~ 75060910 (-)
G925132 NA non-coding upstream 33421 75064770 ~ 75228247 (-)
G925148 NA non-coding upstream 73247 75104596 ~ 75105125 (-)
G925158 NA non-coding upstream 113572 75144921 ~ 75146766 (-)
G925165 NA non-coding upstream 131499 75162848 ~ 75163292 (-)
G924041 NA other downstream 1211037 73630142 ~ 73631970 (-)
G923192 LOC106610383 other downstream 1917273 72905577 ~ 72928468 (-)
LOC110514144 LOC106602209 other downstream 3079087 71747636 ~ 71765505 (-)
LOC110534950 LOC106595337 other downstream 3095123 71744768 ~ 71752698 (-)
LOC118936746 LOC106602209 other downstream 3179873 71658344 ~ 71665901 (-)
G925211 NA other upstream 252642 75283991 ~ 75284673 (-)
G926001 NA other upstream 1364999 76396348 ~ 76399221 (-)
G926732 NA other upstream 2750663 77782012 ~ 77783305 (-)

Expression


Co-expression Network