G925158


Basic Information

Item Value
gene id G925158
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 75144921 ~ 75146766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1052469
tctgtgtgtcagacagtagaactaggttgtgtctgtgtgtcagacagtagaactagGTTGTATCTGTGTGTCAGACAGTAGAactagGTTGTATCTGTGTGTCAGACAGTAGAactaggttgtgtctgtgtgtcagacagtagaactaggttgtgtctgtgtgtcagacagtagaactaggttgtgtctgtgtgtcagacagtagaactagattgtgtctgtgtgtcagacagtAGAACTAGGTTGTA
>TU1052470
agtagatctaggttgtgtctgtgtgtcagacagtagaactagGTTGTTTCTGTGtgtcagacagtagatctaggttgtgtctgtgtgtcagacagtagatctaggttgtgtctgtgtgtcagacagtagaactagGTTGTTTCTGTGtgtcagacagtagatctagGTTGTATCTGTGTGTCAGACAGTAGAactagGTTGTATCTGTGTGTCAGACAGTAGAactaggttgtgtctgtgtgtcagacagtagaactaggttgtgtctgtgtgtcagacagtagaactaggttgtgtctgtgtgtcagacagtagaactagattgtgtctgtgtgtcagacagtAGAACTAGGTTGTA
>TU1052471
agtagatctaggttgtgtctgtgtgtcagacagtagaactagGTTGTTTCTGTGtgtcagacagtagatctaggttgtgtctgtgtgtcagacagtagatctaggttgtgtctgtgtgtcagacagtagaactagGTTGTTTCTGTGtgtcagacagtagatctagGTTGTATCTGTGTGTCAGACAGTAGAactaggttgtgtctgtgtgtcagacagtagaactaggttgtgtctgtgtgtcagacagtagaactaggttgtgtctgtgtgtcagacagtagaactaggttgtgtctgtgtgtcagacagtagaactagattgtgtctgtgtgtcagacagtAGAACTAGGTTGTA
>TU1052472
agtagatctaggttgtgtctgtgtgtcagacagtagaactagGTTGTTTCTGTGtgtcagacagtagatctaggttgtgtctgtgtgtcagacagtagatctaggttgtgtctgtgtgtcagacagtagaactagGTTGTTTCTGTGtgtcagacagtagatctagGTTGTTTCTGTGtgtcagacagtagatctagGTTGTATCTGTGTGTCAGACAGTAGAactagGTTGTATCTGTGTGTCAGACAGTAGAactaggttgtgtctgtgtgtcaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1052469 False 248 lncRNA 0.44 5 75144921 75146315
TU1052470 False 358 lncRNA 0.43 7 75144921 75146766
TU1052471 False 358 lncRNA 0.44 6 75144921 75146766
TU1052472 True 278 lncRNA 0.43 6 75146117 75146766

Neighbor

gene id symbol gene type direction distance location
LOC110516473 LOC106591540 coding downstream 59245 75035730 ~ 75085676 (-)
LOC118936366 LOC106566139 coding downstream 88747 75053116 ~ 75056174 (-)
LOC118966654 LOC106597013 coding downstream 174758 74933999 ~ 74970163 (-)
LOC110517287 LOC106601385 coding downstream 211969 74890707 ~ 74932952 (-)
LOC118936768 NA coding downstream 234768 74894734 ~ 74910153 (-)
LOC118936770 LOC105006021 coding upstream 256877 75403643 ~ 75412894 (-)
LOC110511405 NA coding upstream 344774 75491540 ~ 75494143 (-)
pcdh7a LOC103353181 coding upstream 415149 75561915 ~ 75645371 (-)
LOC110513050 LOC106610486 coding upstream 1233501 76380267 ~ 76417797 (-)
LOC110497198 LOC106602151 coding upstream 1715283 76862049 ~ 76870007 (-)
G925148 NA non-coding downstream 39796 75104596 ~ 75105125 (-)
G925014 NA non-coding downstream 84011 75060289 ~ 75060910 (-)
G925117 NA non-coding downstream 110072 75003992 ~ 75034849 (-)
G925110 NA non-coding downstream 158297 74979585 ~ 74986624 (-)
G925077 NA non-coding downstream 178870 74965151 ~ 74966051 (-)
G925165 NA non-coding upstream 16082 75162848 ~ 75163292 (-)
G925177 NA non-coding upstream 58109 75204875 ~ 75311688 (-)
G925188 LOC106602136 non-coding upstream 72525 75219291 ~ 75239255 (-)
G925186 LOC106594592 non-coding upstream 91810 75238576 ~ 75240552 (-)
G925204 NA non-coding upstream 119087 75265853 ~ 75334503 (-)
G924041 NA other downstream 1512951 73630142 ~ 73631970 (-)
G923192 LOC106610383 other downstream 2219187 72905577 ~ 72928468 (-)
G925211 NA other upstream 137225 75283991 ~ 75284673 (-)
G926001 NA other upstream 1249582 76396348 ~ 76399221 (-)
G926732 NA other upstream 2635246 77782012 ~ 77783305 (-)
G927157 timm10 other upstream 2815771 77961348 ~ 77963652 (-)

Expression


Co-expression Network