G926739


Basic Information

Item Value
gene id G926739
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 77809822 ~ 77822468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1054503
ttttttatttaaatgtttattaATATCACACATTAAGGCATACTATTTATAGGGTTATTGGCAGCATATTGTAGGAAATGTTTCATTTTATTCTTCCACCTCAACATGAATCGATTAATCACTTTTTTTTCTTAGTAGCTGATAGTCATAggcctagctctggtccagggcgtttaGTGCGAACACACCGACTGTACTTGCGCAAAATAGTTCGCTGCGTCATCtagatatgtgtgcaacaaaagttcaacattcaccttatGTTACCATTTCTGTCAACCCgtttacacatacagtttgaCGTATGCGTTCGATAAATCCAACGTATaaaccacacagaacgcactgaaACAGCCTCTGCACCGCAATTGTCAAAGGCaacgcagcgttccattggaaattaatgtacCTCTGGTGTCCCAAAACGCAAAAATCACAGTCACTGTGTTCAACGCGTAAGATATAAGAGAAATGCGCTCTAACGCTCTGGACCAGAGCTATGGAAGGAGGAACTGAAGTGCAAGCTCCAATCTATTTCGCCAGGTGGCGACAATAGTCCAGACAAAGTATCAATGATTTTCTACACACCCATACACCAAGGCTTTTGCACTATTATTACCAGTACAGCATACATGGTCTACACTGAGCTAAAATATTACCAATACAGCATACATGGTCTATAATAACATATTATATTACCAGTACAGCATACATGGTCTATACTGACCCATTATATTACCAGTACAGCAAACATGGTCTTTACTGAGCCATTATATTACCAGTACAGCATACatggTCTATACTGAGCCATTATATTACCAGTACAGCATACATGGTCTATACTGACCCATTATATTACCAGTACAGCATACATGGTCTATACTGACCCATTATATTACCAGTACAGCATACATGGTCTATACTGACCCATTATATTACCAGTACAGCATACATGGTCTATACTGAGCCATTATATTACCAGTACAGCATACATGGTCTATACTGAGCCATTATATTACCAGTACAGCATACATGGTCTATACTGAGCCATTATATTACCAGTACAGCATACATGG
>TU1054504
ttttttatttaaatgtttattaATATCACACATTAAGGCATACTATTTATAGGGTTATTGGCAGCATATTGTAGGAAATGTTTCATTTTATTCTTCCACCTCAACATGAATCGATTAATCACTTTTTTTTCTTAGTAGCTGATAGTCATAggcctagctctggtccagggcgtttaGTGCGAACACACCGACTGTACTTGCGCAAAATAGTTCGCTGCGTCATCtagatatgtgtgcaacaaaagttcaacattcaccttatGTTACCATTTCTGTCAACCCgtttacacatacagtttgaCGTATGCGTTCGATAAATCCAACGTATaaaccacacagaacgcactgaaACAGCCTCTGCACCGCAATTGTCAAAGGCaacgcagcgttccattggaaattaatgtacCTCTGGTGTCCCAAAACGCAAAAATCACAGTCACTGTGTTCAACGCGTAAGATATAAGAGAAATGCGCTCTAACGCTCTGGACCAGAGCTATGGAAGGAGGAACTGAAGTGCAAGCTCCAATCTATTTCGCCAGGTGGCGACAATAGTCCAGACAAAGTATCAATGATTTTCTACACACCCATACACCAAGGCTTTTGCACTATTATTACCAGTACAGCATACATGGTCTACACTGAGCTAAAATATTACCAATACAGCATACATGGTCTATAATAACATATTATATTACCAGTACAGCATACATGGTCTATACTGACCCATTATATTACCAGTACAGCAAACATGGTCTTTACTGAGCCATTATATTACCAGTACAGCATACATGGTCTATACTGAGCCATTATATTACCAGTACAGCATACATGGTCTATACTGACCCATTATATTACCAGTACAGCATACATGGTCTATACTGACCCATTATATTACCAGTACAGCATACATGGTCTATACTGAGCCATTATATTACCAGTACAGCATACATGGTCTATAATAACATATTATATTACCAGTACAGCATACATGGTCTATAGTGACGTTGTACTGTTAAATAATAAGCTGTTGTTTCTTTTCTAATACATCAGGATTTCTATTACTTAAGCTGCTTCGCCAGTCCACTTAACTCCGTAACAGTTTCTGATAATATAATGTTGGGATGTCAttacaaaataaaacataatctAGTCACATTGGATATCCAAATGAGAATTTTAGTCTGTTTATGTCGCCGGCTGGGTTTTGAACCAGGGTCATATGTGCAAGAACAGAGTGTGTTAGCCCACCATGCTAAGATAAGGGTCAATTTACCTATGTTTTTTCCCCCAATCACTTTGCCAAATTTTCACAAGAATGAGCTTAACACAAAAATCTAAAACAGATCATCAAAATGTCTCATgtttcaaaactctaaacacatagTTACAATGTGGACCTTGTCTTCTCACACATCCAGTGGATATTCGTTGTGCATGGTACGTCGTTCCAACTCTTTAGTGGGTCTGATGCCATCTTTGAGAGATGAGCGCAGTCTTCACCCTGATGTGCATCGTTTGGTTCCCCATCCCTCCAATACCtataacaaaacagatggcaaaAAGTAGTCAAAAAAGCAATCAAACAGGCTACAGCACAGATAGTCAGACGGTAAAAAGTAACCTGGAACAACACAGAAACAGAAGGTAAAAAGTCACCTGGAACAACACAGGGAAACAGAAGGTAAAAAGACACCTGGAACAACACAGGGAAACAGAAGGTAAAAAGACATCCAACACatatgacatttacatttgagtcatttagcagacgctcttacccagagagacttacagttagtgcattcatcttcagatagctaggtgggacaaccacatctcagtcatagtaagtacatttttcctcagtaaagtagctatcagcaaagtcagagctagtaaggtaagagctagtaaggtaaggtaagagctagtgaggttaggtaagagctagtaaggtaaggtaagagctagtaaggttaggtaagagc
>TU1054506
GGTCTATACTGAGCCATTATATTACCAGTACAGCATACATGGTCTATAATAACATATTATATTACCAGTACAGCATACATGGTCTATAATAACATATTATATTACCAGTACAGCATACATGGTCTATACTGAGCCATTATATTACCAGTACAGCATACATGGTCTATACTGACCCATTATATTACCAGTACAGCATACATGGTCTATACTGAGCCATTATATTACCAGTACAGCATACATGGTCTATAATAACATATTATATTACCAGTACAGCATACATGGTCTATAGTGACGTTGTACTGTTAAATAATAAGCTGTTGTTTCTTTTCTAATACATCAGGATTTCTATTACTTAAGCTGCTTCGCCAGTCCACTTAACTCCGTAACAGTTTCTGATAATATAATGTTGGGATGTCAttacaaaataaaacataatctAGTCACATTGGATATCCAAATGAGAATTTTAGTCTGTTTATGTCGCCGGCTGGGTTTTGAACCAGGGTCATATGTGCAAGAACAGAGTGTGTTAGCCCACCATGCTAAGATAAGGGTCAATTTACCTATGTTTTTTCCCCCAATCACTTTGCCAAATTTTCACAAGAATGAGCTTAACACAAAAATCTAAAACAGATCATCAAAATGTCTCATgtttcaaaactctaaacacatagTTACAATGTGGACCTTGTCTTCTCACACATCCAGTGGATATTCGTTGTGCATGGTACGTCGTTCCAACTCTTTAGTGGGTCTGATGCCATCTTTGAGAGATGAGCGCAGTCTTCACCCTGATGTGCATCGTTTGGTTCCCCATCCCTCCAATACCtTGcccacagcc

Function

NR:

description
C-type lectin domain family 4 member E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1054503 False 1076 lncRNA 0.39 5 77809822 77816568
TU1054504 False 1992 lncRNA 0.39 7 77809822 77819241
TU1054506 True 841 lncRNA 0.37 3 77816247 77822468

Neighbor

gene id symbol gene type direction distance location
LOC110510687 LOC106591138 coding upstream 75331 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 coding upstream 177014 77360360 ~ 77632808 (+)
LOC118936778 LOC106594846 coding downstream 115011 77937479 ~ 77946437 (+)
LOC110498611 LOC106610517 coding downstream 209166 78031634 ~ 78053204 (+)
LOC110497216 LOC106610535 coding downstream 231186 78053654 ~ 78057090 (+)
LOC110512491 LOC106610534 coding downstream 234881 78057349 ~ 78067236 (+)
LOC110497220 NA coding downstream 244852 78067320 ~ 78070325 (+)
G926582 NA non-coding upstream 26084 77783381 ~ 77783738 (+)
G926579 NA non-coding upstream 30747 77778778 ~ 77779075 (+)
G926570 NA non-coding upstream 47796 77761631 ~ 77762026 (+)
G926565 NA non-coding upstream 54940 77754555 ~ 77754882 (+)
G926457 LOC106598223 non-coding upstream 57779 77750780 ~ 77752043 (+)
G926742 NA non-coding downstream 454 77822922 ~ 77823147 (+)
G926766 NA non-coding downstream 35287 77857755 ~ 77857974 (+)
G926767 NA non-coding downstream 37571 77860039 ~ 77860291 (+)
G926778 NA non-coding downstream 58049 77880517 ~ 77880729 (+)
G926798 NA non-coding downstream 60707 77883175 ~ 77883827 (+)
G926448 LOC105024706 other upstream 513813 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 925580 76869703 ~ 76884980 (+)
G924927 NA other upstream 2250223 75557460 ~ 75562892 (+)
LOC110497229 LOC106602251 other downstream 697564 78519650 ~ 78533161 (+)
G927061 LOC106602167 other downstream 953467 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 1230023 79023569 ~ 79065796 (+)
G927584 NA other downstream 1377813 79200281 ~ 79202981 (+)
G927606 NA other downstream 1458918 79281386 ~ 79284144 (+)

Expression


Co-expression Network