XLOC_002820 (ints2)



Basic Information


Item Value
gene id XLOC_002820
gene name ints2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27977373 ~ 28028999 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00005230
GAGACGCAGCCAGAGTTCAGCATGCTCACAGCGGAGCAGATGATCGCTTGTGCTAAAATCATTACTTTTTCTACTTTATAGCTTGCTAAGCACTCTGGCCGACACATGTGGGTTTAATATAGAGTAAGTGGATTGTATTaagcatattattattttaaatatattgctTCATTTAGTTAAATCGGGATGAATGGATCTCTTAAGCAGGATAGCTTTAGCAGCTAGCATGTTAGCTTACCGGTGAGCTGTCCTATTTCGACCGAAGAAGATCAACTTCCTTTTCAGAGAAAATCACGACAGACCGCGGTCTTACAGGCCTCAGCGGGTTTCTTTTGTAACCAGCGGCGCTGTTGAAGTCTAGAAGAATGACAGACAGTGCCAGTCTTCAGTTTGTGAGCCCGTATGCATTCGAGGCCATGCAGAAGGTGGATGTAGCCCGACTGGCAGCTTTAAGTGACCCAGAGCTGCGTCTCCTTCTGCCCTGTCTGGTCAGGATGGCTCTCTGTGCCCCTGCAGATCAGAGCAATGCCTGGGCACAGGATAAGAAGCTCATCCTGCGGCTGCTGTCAGGGGTGGAGGCGGTGAACTCCATTGTTGCTCTGCTGTCTGTGGATTTCCATGCTTTGGAGCAGGATGCTAGAAAAGAGCAGCAGCTAAGGCATAAGGCTGGAGGATCTAATGGCGAGAGCATTCTGGTGTCTCAGCTTCAGCATGGTTTGACTCTGGAGTTTGAGCACAGTGATCCTCTCAGGAGACTCAGACTGGCTCTCAGTGAGCTGCTGGCCATTATGAACAAGGTGGCTGACTCTAATGGAGAGTTTTTCCTCAAGTCCTCTGAGTTGTTTGAGAGTCCAGTGTACCTCGAGGAAGTGGCTGATGTTCTCTGCATCCTACAAGCAGAGCTGCCATCTTTGCTGCCCATCATTGAAGTGGCTGAAGCTCTTCTTCACGTGAGGAATGGAGAGTGGTTTCTCTGCCTTCTGGTGGCAAATGTCCCGGACAGCTTCAATGAAGTGTGCAGAGGGCTGATAAAGAACGGAGAGCGGCAGGACGAGGAGAGTGTTGGTGGTCGACGCAGGACAGAAGCTCTCCGGCAGCTGTGTCAGATGAACCCGTCTCAGGCTCTGAACATCAGGGCCATGGTGGTGGAAGAGTGTCATCTCCCAGGCCTCGGCGTTGCTTTGACACTGGATTATAAGCCAGACATGGCAGATGAGGCGGTCAGTCCTCTGGTGTCATACGTCAGTGGTCTGCTTTTAGGCACCAATGGAAAAGTGCGCACATGGTTTAGTTTGTTCATTCGCAATGGACAGCAGagaaaaagagagagcagTTCGGTGCTGTGGCAGATGCGGAGGCAGCTGCTGTTGGAGCTGGTGGCCATTTTACCCCGCTCCCGCAGTACACACGTCCCCAACGACAGCGACATGGACACAGAGAGCAGCTCGGGTTATTCTGGCCTTCGGGAGGAGCATGTGGTGAAAGCCAGTGCACTGCTACGACTCTATTGCGCTCTGATGGGGATTGCCGGTCTTAGGCCCACAGATGAAGAGGCAGAGCAGCTGCTGCAGTTGATGACCAGTCGTCCACCAGCTACGCCTGCTGGAGTGCGCTTCGTCTCCCTGTCTTTCTGTAAACTGCTGGCGTTCCCCACTCTTGTCAGCACTCCAGAACAGGAGCAGCTGATGGTAATGTGGCTCAGCTGGATGATAAAAGAGGAGGAGTATTTCGAGAGtgccGCCGGAGTGTCGGCCTCTTTTGGAGAGATGCTATTACTGGTGGCCATGTATTTCCATAGCAACCAGCTGAGTGCCATCATTGAGCTGGTTTGCTCCACCCTTGGGATGAAGATCGCCATCAAACCCAGTTCACTAAGCAAAATGAAGACCATTTTTACTCAGGAAATCTTCACCGAACAGGTGGTCACAGCACATGCAGTGAGAGTGGCAGTTACTAATAACCTCAGTGCTAACATCACTGGATTCCTCCCCATCCACTGCATATACCAGCTCCTGAGAAGCAGAGCCTTCACCAAACACAAAGTGTCCATAAAGGACTGGATTTTCAGACAGCTGTGTGAGACGACCACTCCGCTTCACACTCAGCTGCTTCCTTTAATTGATGTTTACATTAACTCCATCCTGACCCCTGCTTCCAAGACCAACCCCGAGGCCACCaaccagccaatcacagagcAGGAGATCCTTAATGTTTTCCAGGGCTTGGCAGGGGGAGACGGAGGGAAAGTTCGCTCTCAGTACACCATCACCACCCAGTTGCTCATTCTTTATTACATCCTGTCCTATGAGGAAGCTCTGCTCGCTAATACAAAGACACTCGCACTTATGCAGAAGAAACCCAAATCATACTCTGCCGCCCTCATGGACCAGATTCCCATTAAACACCTCATCCGACAGGCTCAAGGACTGCAGCAGGAGCTGGGAGTCTTGCATTCTGCTCTACTTCGTCTGCTGGCCACCAACTATCCTCACCTGTGCATGGTGGAAGATTGGATCAGTGAGGAGGAAGTGACCGGAACTCTGCCTTTACTGAGGAAGATGCTGCTGACATCATCATCCTGCAAATACTCACAAGCTCAGCTACGAGAGGcTTTCCAGAATGTGCTCTCCGGTGGGCCGAGGCTGCTCCGTATCCTGGAGCACCTGACGCTGCTCTCTGCGGGAGATCTGATCCCATACGCAGAGGCTCTCACTGCTAACATGGGGCTGCTTTTAGAGGACACTGTCTCTCGCAGGATCCTACAGACTGTTAACAAACTCTGGATGGTGCTTAATACTGTCATGCCACGCAGGCTATGGGTGATGACAGTAAATGCTCTGCAGTCCTCAGTGAAGCTCCTTCGGCAGCAGAGATACACACAGAATGATCTTATGGTGGATCCTCTCATAGTCCTGCGCTGCGACCCCAGAGTTTTCAGGTGTCCTCCGTTAATGGACATCACACTTCACATGCTTAACGGGTACCTGCTGGCATCCAAGGCCTACTTAAACGCCCACCTGAAGGAGACGGCTGAATTTGAACGGCAGGCTCAAACAGTATCAAACCTTGGGCTCAGTGGCCAACCTGACACACCCGAGGTCACAAGAGAGGAGCTGAAGAACGCGTTACTGGCAGCACAGGACAGTGCAGCGGTGCAGATCCTTCTGGAGGTGTGTTTGGCGTCTCCTCAGGAGGAGCTGCAGCTGTCAGGAGGTGGAGCAGGAGACAGTCTGTTGAGGTGCATTCAGTCTGCTCCAGGTTTTCCCATGCGGAGGCAGGTGGGAGACACGGGGGCCCAGGGGGGACGCAAGGCAGAGGGGGGTCTGCTCAGTGACCTGAGGGAGGTGCAGTGTCTCATCTGCTGCCTGCTGCACCAAATGTTCATCGCAGACCCCAACATCGCCAAACTAGTGCACTTCCAAGGTTATCCACAGCCTTTGCTTCCTTTGACGGTGGCAGGAATTCCTTCCATGCACATCTGTCTGGACTTTATCCCAGAACTTCTTGCTCAGCCACAGCTAGAGAAACAGATCTTCGCCATACAGCTGTTGTCCCATCTGTGCACCCAGTACGCCCTGCCCAAATCCCTCAGCGTGGCACGTCTTGCCATTAGTGTGATGGGTACCCTCctcacagTGCTGACTCGTGCCAAGCGCTTTGCATTTTTCATGCCGACGCTGTCATGCCTGGTTTCGTTCTGCAAGGCTTTCCCTCCACTCTTTGATGATGCCATGTCGCTGCTGGTTCAGGTGGGACAGGTGTCTGCTGCTGATGTTACCACCAAGGCCAGAGACATCGACCCTTTCATCACCAGGCTTCAGTATCTGAAGGAGAAGCCACAGGAAATAGCACCATCAGAAAGCAAACTCTGTCTGCCCAAGAGATCAGCAGAAGAGCTGAGCAGAGCCGATCCAGACGTCCAGCTGTGCTATCAGATAGAGGCCACTTTCATGGACATCATCAGCTCCAGCACACAGGCAttgtgacacaaacacacacagaatggGTTCATTTTGTGTTTTGAACTGTTACAGGACTCTGGGTAATGGGAAtctatttgaaatattataatgCAACAGCTGTCAAAGCAGCGGttcagtttaaagggatagtttacccaaaactgaaaattctgtcatcatttacttcatTCATTAcaagttattttgattaaaaatttgGAAAcctaaaaccattgacttccagggCATTTGTTTTTCCTGCGATAGAAATCCATGGTTACAGATgtctaacattttttaaattattttcttttgtcctgaacagaaaaaggaaactcaaagtttaaaaccacttgagagtgaataaattagtgagtaaattttcagttttgtttgagctgtccctttaaggtCAGTCCACTTAAAACGCTGAACATGAGTTCTCTGTTTAAATCCTCCATATTTGGCATCCCAAATACCACAAGTGATGAAAACCTCTGGAATGAAGGTAAGGAAGGAGAGCATAATTTGATACAGTAAATTGTACTTATAGGGTGTATATGAATAGTTAAATCACAGAGTGccgtttttaaaaacaaaagacacGATGGACTGAGAGATGAAAATAAGATTGCAATTTCATATTCTGTTGCCAGAGAAAAACCACTGTCTATATTTGAGTCAAAATCACATTCAACTTTCCTGGAAGTGAATTGGATGGCAGTTTTCTGAAGGATTTGTGGAATTCAGGTCACAAAGCAACTTGCTGTAGAGTTAGAAAATTTCCAAATGGTGTGTACTAATTTGTTAGTTGAGTGTGTGGCCTGTTGTGCGTCAAGGACACTTAGCAAATTATATTATTGGTCTGTTTTCTAGaccagctttttttttctttcagatcaAATTCACCTTTTCCTAAAGTGTAACATCTGGATTTTTGTTTGTTATCTTGGTTTTGTATACATGTTTATCTTATGCTTTGAACTTTTGTATTAAAACATCTTTTCGGAA
>TCONS_00005231
AGACGCAGCCAGAGTTCAGCATGCTCACAGCGGAGCAGATGATCGCTTGTGCTAAAATCATTACTTTTTCTACTTTATAGCTTGCTAAGCACTCTGGCCGACACATGTGGGTTTAATATAGAGTAAGTGGATTGTATTaagcatattattattttaaatatattgctTCATTTAGTTAAATCGGGATGAATGGATCTCTTAAGCAGGATAGCTTTAGCAGCTAGCATGTTAGCTTACCGGTGAGCTGTCCTATTTCGACCGAAGAAGATCAACTTCCTTTTCAGAGAAAATCACGACAGACCGCGGTCTTACAGGCCTCAGCGGGTTTCTTTTGTAACCAGCGGCGCTGTTGAAGTCTAGAAGAATGACAGACAGTGCCAGTCTTCAGTTTGTGAGCCCGTATGCATTCGAGGCCATGCAGAAGGTGGATGTAGCCCGACTGGCAGCTTTAAGTGACCCAGAGCTGCGTCTCCTTCTGCCCTGTCTGGTCAGGATGGCTCTCTGTGCCCCTGCAGATCAGAGCAATGCCTGGGCACAGGATAAGAAGCTCATCCTGCGGCTGCTGTCAGGGGTGGAGGCGGTGAACTCCATTGTTGCTCTGCTGTCTGTGGATTTCCATGCTTTGGAGCAGGATGCTAGAAAAGAGCAGCAGCTAAGGCATAAGGCTGGAGGATCTAATGGCGAGAGCATTCTGGTGTCTCAGCTTCAGCATGGTTTGACTCTGGAGTTTGAGCACAGTGATCCTCTCAGGAGACTCAGACTGGCTCTCAGTGAGCTGCTGGCCATTATGAACAAGGTTCAGTGTCCTTTTATTTATTCCTGCATAGGGATGCTCATTAGGGTAATTTTCCCAACCGGCGCTCATTAATCGGATATTAATCGTTAACTGGGCAGATTAAGATGaacttattatttaaatacaaaaatgaatTGAGGTGTCTATTTTGGATCTGACACATCAAATATTGCATTTTGaaaagctgatttattttaacgtGCAAACAAcagcatacagaacatatcaACAACAGAACATCTTCAAGCAGTAGTGTTTTTAAcagcatagaaaaaaaaatactgaataaaaaa
>TCONS_00005232
ATGACAGACAGTGCCAGTCTTCAGTTTGTGAGCCCGTATGCATTCGAGGCCATGCAGAAGGTGGATGTAGCCCGACTGGCAGCTTTAAGTGACCCAGAGCTGCGTCTCCTTCTGCCCTGTCTGGTCAGGATGGCTCTCTGTGCCCCTGCAGATCAGAGCAATGCCTGGGCACAGGATAAGAAGCTCATCCTGCGGCTGCTGTCAGGGGTGGAGGCGGTGAACTCCATTGTTGCTCTGCTGTCTGTGGATTTCCATGCTTTGGAGCAGGATGCTAGAAAAGAGCAGCAGCTAAGGCATAAGGCTGGAGGATCTAATGGCGAGAGCATTCTGGTGTCTCAGCTTCAGCATGGTTTGACTCTGGAGTTTGAGCACAGTGATCCTCTCAGGAGACTCAGACTGGCTCTCAGTGAGCTGCTGGCCATTATGAACAAGGTTCAGTGTCCTTTTATTTATTCCTGCATAGGGATGCTCATTAGGGTAATTTTCCCAACCGGCGCTCATTAATCG

Function


symbol description
ints2 Predicted to be involved in snRNA 3'-end processing. Predicted to act upstream of or within snRNA processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS2 (integrator complex subunit 2).

GO:

id name namespace
GO:0034472 snRNA 3'-end processing biological_process
GO:0016180 snRNA processing biological_process
GO:0032039 integrator complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050522-148 Predicted to be involved in snRNA 3'-end processing. Predicted to act upstream of or within snRNA processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS2 (integrator complex subunit 2).

Ensembl:

ensembl_id ENSDARG00000069085

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00005230 False 4973 mRNA 0.48 25 27977373 28028999
TCONS_00005231 False 1089 mRNA 0.44 3 28026609 28028998
TCONS_00005232 True 507 mRNA 0.52 2 28026827 28027490
Loading

Neighbor


gene id symbol gene type direction distance location
XLOC_002818 auts2a coding downstream 235564 27182704 ~ 27741809 (-)
XLOC_002819 AL844197.1 coding downstream 563011 27414246 ~ 27414362 (-)
XLOC_002817 BX248510.3 coding downstream 807301 27169956 ~ 27170072 (-)
XLOC_002816 NA coding downstream 815228 27157937 ~ 27162145 (-)
XLOC_002815 cnih2 coding downstream 928203 27028019 ~ 27049170 (-)
XLOC_002821 med13a coding upstream 579 28029578 ~ 28118035 (-)
XLOC_002822 rps6kb1a coding upstream 143345 28172344 ~ 28193642 (-)
XLOC_002823 NA coding upstream 168917 28197916 ~ 28291989 (-)
XLOC_002824 NA coding upstream 217836 28246835 ~ 28248743 (-)
XLOC_002825 CR392341.5 coding upstream 263844 28292843 ~ 28292959 (-)
XLOC_002813 NA non-coding downstream 974759 27000562 ~ 27002614 (-)
XLOC_002809 NA non-coding downstream 1075068 26901272 ~ 26902305 (-)
XLOC_002828 NA non-coding upstream 353086 28382085 ~ 28385569 (-)
XLOC_002830 NA non-coding upstream 388652 28417651 ~ 28418179 (-)

Expression


Expression of XLOC_002820(ints2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Expression of XLOC_002820(ints2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network