G927234


Basic Information

Item Value
gene id G927234
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78099980 ~ 78272481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1055207
ATCTAAAAGTGttcaacaaacacacaaaaacacacctcATATCAGGGTCCATGGTCAGATTAAGATCCTTGTTTGGTGACCCATCCTTCTGTCTTTCTTTAGGGATGTCACCACCCTCAGCCCCCTGATGATAACTCATTATAACTCTCAGAGAGGAGACCTCAGAATCCTGAAGAGGACTGGTCTAGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGACCTCAGAATCCTGAAGAGGACTGGTCTAGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGGTCTCACAATCCTGAAGAGGACTGGTCTGGTCCCAAAT
>TU1055204
ATCTAAAAGTGttcaacaaacacacaaaaacacacctcATATCAGGGTCCATGGTCAGATTAAGATCCTTGTTTGGTGACCCATCCTTCTGTCTTTCTTTAGGGATGTCACCACCCTCAGCCCCCTGATGATAACTCATTATAACTCTCAGAGAGGAGACCTCAGAATCCTGAAGAGGACTGGTCTAGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGACCTCAGAATCCTGAAGAGGACTGGTCTAGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGACCTCAGAATCCTGAAGAGGACTGGTCTAGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGGCCTCAGAATCCTGAAGAGGACTGGTCTGGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGACCTCAGAATCCTGAAGAGGACTGGTCTGGTCCCATATCAATCTG
>TU1055214
ATCTAAAAGTGttcaacaaacacacaaaaacacacctcATATCAGGGTCCATGGTCAGATTAAGATCCTTGTTTGGTGACCCATCCTTCTGTCTTTCTTTAGGGATGTCACCACCCTCAGCCCCCTGATGATAACTCATTATAACTCTCAGAGAGGAGACCTCAGAATCCTGAAGAGGACTGGTCTAGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGACCTCAGAATCCTGAAGAGGACTGGTCTAGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGACCTCAGAATCCTGAAGAGGACTGGTCTAGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGGTCTCACAATCCTGAAGAGGACTTGTCTGGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGGCCTCAGAATCCTGAAGAGGACTGGTCTGGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGGCCTCAGAATCCTGAAGAGGACTGGTCTGGTCCCATATCAATCTGATGATAACTCATTATAACTCTCAGAGAGGAGACCTCAGAATCCTGAAGAGGACTGGTCTGGTCCCATATCAATCTG

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1055207 False 348 lncRNA 0.43 2 78099980 78272481
TU1055204 False 507 lncRNA 0.43 2 78149071 78272481
TU1055214 True 659 lncRNA 0.43 2 78149071 78272481

Neighbor

gene id symbol gene type direction distance location
LOC110498610 LOC106610491 coding downstream 17064 78072786 ~ 78082916 (-)
LOC110519243 LOC106610489 coding downstream 67376 77977609 ~ 78032604 (-)
LOC110497207 LOC106610467 coding downstream 133118 77963529 ~ 77966862 (-)
timm10 timm10 coding downstream 136301 77961468 ~ 77963679 (-)
LOC110497206 unc93b1 coding downstream 138903 77951359 ~ 77961077 (-)
LOC110498425 LOC106610496 coding upstream 22107 78294588 ~ 78300233 (-)
LOC118936782 LOC106610527 coding upstream 66542 78339023 ~ 78354474 (-)
LOC110497241 LOC106610501 coding upstream 168279 78440760 ~ 78445626 (-)
LOC110498612 LOC106610501 coding upstream 169178 78441659 ~ 78442168 (-)
LOC110497224 LOC106610522 coding upstream 191923 78464404 ~ 78474168 (-)
G927210 NA non-coding downstream 50491 78048747 ~ 78049489 (-)
G927165 NA non-coding downstream 57926 78040390 ~ 78042054 (-)
G927207 NA non-coding downstream 59790 78039966 ~ 78040190 (-)
G927203 NA non-coding downstream 64954 78034755 ~ 78035026 (-)
G927192 NA non-coding downstream 93687 78005953 ~ 78006293 (-)
G927287 NA non-coding upstream 46989 78319470 ~ 78320058 (-)
G927290 NA non-coding upstream 52604 78325085 ~ 78325608 (-)
G927335 NA non-coding upstream 163200 78435681 ~ 78436459 (-)
G927336 NA non-coding upstream 163992 78436473 ~ 78436684 (-)
G927157 timm10 other downstream 136328 77961348 ~ 77963652 (-)
G926732 NA other downstream 316675 77782012 ~ 77783305 (-)
G926001 NA other downstream 1702032 76396348 ~ 76399221 (-)
LOC110511405 NA other downstream 2605869 75491540 ~ 75494143 (-)
G925211 NA other downstream 2815307 75283991 ~ 75284673 (-)
G927317 LOC106610497 other upstream 109788 78382269 ~ 78434096 (-)
G927222 LOC106610501 other upstream 168824 78441305 ~ 78441982 (-)
LOC110497238 LOC106610518 other upstream 234596 78505862 ~ 78510097 (-)

Expression


Co-expression Network