G927258


Basic Information

Item Value
gene id G927258
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78245992 ~ 78247643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1055241
ACAAAATCGTTTATTCTTCTGATATCTAACAAATAAATGATTCTCCAATCAACTTAAAGCATAGAATACTTGAGATGGAAAATACATATTATGACCTGTCTGTATGGTCAAAAAACTATACCGCTCCCGCATCTAGCAAGGACTCCCTCCCCCGAATGTCCAACTTCCTGCCTTTATCCTAACACACTTACCACAATACAATGAATGGGCAAGAGGGGGGGCCAAAAACTGAGTTACACTAACAAATTAATATATCTCAATCAGGTAAATATAAATCATAAAAAGGTACGTACCTAATATTCCATCATATACATTcatatttaatatatttacaCAAATATACATGGAGCTCCGTATGTTCAGTCTTTTATACAAATATGTCCAAATCAGCTCTAACAGGGGGtactagaggactggagttgggctgttgagggtacaggaggactggagttgggctgttgggggtacaggaggactggagttgggctgttgggggtacagggggactggagttgggctgttgggggtaattGAGGacttgcaaagaaaaagccctatctcagactggccaataagaagaaaaaattaagaggggaaaaagaacagacactgaacagagaaactctgcctagaagtccagcatcccggagtcgcctctccactgttgacgttgagactggtgttttgaggatgctatttaatgaagctgccagttgaggacttgggaggtgtctgtttctcaaactagacactctaatgtacttgtcctcttgctcagttgtgcaccggggcctcccactcctctttctacctggttagagacagtttgctctgttctgtgaagggagtagtacacagcattgtatgagatcttcagtttcttgacaatttctcgcatagaacagccttcatttctcaaaacaagaatagactgatgagtttgagaagaaaggtctttgtttctggccattttgagcctgtaatcaaacccacaaatgctgatgctccagatactcaactagtctttagaaggccagttttattgctttaaatcaggacaacagttttcagctatgctaacaaaattgcaaaagggttttctaatgatcaattagccatttaaaattataaacttggattagctaacacaacgtgccattggaacacaggagtgatggtttctgataatgggcctctgtacgcctagatattccataaaaaaatcaaccatttccagctacaatagtcatttacaacattaacaatgtctacactttatttctgatcaatttgatgttattttaatggacaaaaaaaattgcttgtctttcaaaaacaaggacatttctaagtgaccccaaacttctgaacggtagtgtatatcaagCATCCATGAAGAGTTTTAATGAAGTTGCATTACTGATGTTCACTGATTATGAATTACACTGTATCCAAACTAATGTCTTCAAAGCAATGAAGTCATTGAACAAATCACTATTAGAAGGTGTGATCCATTAAAAACAGATTTAAAGTCTACGTAGTAATCATTCTTGAAGTAAATTATTTAAGAGACCAATACATGTGTAAAACCTGTATATGAAACCACAAATTATTCTCTACA
>TU1055243
ACAAAATCGTTTATTCTTCTGATATCTAACAAATAAATGATTCTCCAATCAACTTAAAGCATAGAATACTTGAGATGGAAAATACATATTATGACCTGTCTGTATGGTCAAAAAACTATACCGCTCCCGCATCTAGCAAGGACTCCCTCCCCCGAATGTCCAACTTCCTGCCTTTATCCTAACACACTTACCACAATACAATGAATGGGCAAGAGGGGGGGCCAAAAACTGAGTTACACTAACAAATTAATATATCTCAATCAGGTAAATATAAATCATAAAAAGGTACGTACCTAATATTCCATCATATACATTcatatttaatatatttacaCAAATATACATGGAGCTCCGTATGTTCAGTCTTTTATACAAATATGTCCAAATCAGCTCTAACAGGGGGtactagaggactggagttgggctgttgagggtactggaggactggagttgggctgttgggggtaattGAGGacttgcaaagaaaaagccctatctcagactggccaataagaagaaaaaattaagaggggaaaaagaacagacactgaacagagaaactctgcctagaagtccagcatcccggagtcgcctctccactgttgacgttgagactggtgttttgaggatgctatttaatgaagctgccagttgaggacttgggaggtgtctgtttctcaaactagacactctaatgtacttgtcctcttgctcagttgtgcaccggggcctcccactcctctttctacctggttagagacagtttgctctgttctgtgaagggagtagtacacagcattgtatgagatcttcagtttcttgacaatttctcgcatagaacagccttcatttctcaaaacaagaatagactgatgagtttgagaagaaaggtctttgtttctggccattttgagcctgtaatcaaacccacaaatgctgatgctccagatactcaactagtctttagaaggccagttttattgctttaaatcaggacaacagttttcagctatgctaacaaaattgcaaaagggttttctaatgatcaattagccatttaaaattataaacttggattagctaacacaacgtgccattggaacacaggagtgatggtttctgataatgggcctctgtacgcctagatattccataaaaaaatcaaccatttccagctacaatagtcatttacaacattaacaatgtctacactttatttctgatcaatttgatgttattttaatggacaaaaaaaattgcttgtctttcaaaaacaaggacatttctaagtgaccccaaacttctgaacggtagtgtatatcaagCATCCATGAAGAGTTTTAATGAAGTTGCATTACTGATGTTCACTGATTATGAATTACACTGTATCCAAACTAATGTCTTCAAAGCAATGAAGTCATTGAACAAATCACTATTAGAAGGTGTGATCCATTAAAAACAGATTTAAAGTCTACGTAGTAATCATTCTTGAAGTAAATTATTTAAGAGACCAATACATGTGTAAAACCTGTATATGAAACCACAAATTATTCTCTACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1055241 False 1621 lncRNA 0.38 2 78245992 78247643
TU1055243 True 1559 lncRNA 0.37 2 78245992 78247643

Neighbor

gene id symbol gene type direction distance location
LOC110498610 LOC106610491 coding downstream 163076 78072786 ~ 78082916 (-)
LOC110519243 LOC106610489 coding downstream 213388 77977609 ~ 78032604 (-)
LOC110497207 LOC106610467 coding downstream 279130 77963529 ~ 77966862 (-)
timm10 timm10 coding downstream 282313 77961468 ~ 77963679 (-)
LOC110497206 unc93b1 coding downstream 284915 77951359 ~ 77961077 (-)
LOC110498425 LOC106610496 coding upstream 46945 78294588 ~ 78300233 (-)
LOC118936782 LOC106610527 coding upstream 91380 78339023 ~ 78354474 (-)
LOC110497241 LOC106610501 coding upstream 193117 78440760 ~ 78445626 (-)
LOC110498612 LOC106610501 coding upstream 194016 78441659 ~ 78442168 (-)
LOC110497224 LOC106610522 coding upstream 216761 78464404 ~ 78474168 (-)
G927257 NA non-coding downstream 6718 78237960 ~ 78239274 (-)
G927247 LOC106610409 non-coding downstream 26004 78219281 ~ 78219988 (-)
G927213 NA non-coding downstream 79395 78070599 ~ 78166597 (-)
G927210 NA non-coding downstream 196503 78048747 ~ 78049489 (-)
G927165 NA non-coding downstream 203938 78040390 ~ 78042054 (-)
G927263 NA non-coding upstream 16086 78263729 ~ 78264369 (-)
G927287 NA non-coding upstream 71827 78319470 ~ 78320058 (-)
G927290 NA non-coding upstream 77442 78325085 ~ 78325608 (-)
G927335 NA non-coding upstream 188038 78435681 ~ 78436459 (-)
G927157 timm10 other downstream 282340 77961348 ~ 77963652 (-)
G926732 NA other downstream 462687 77782012 ~ 77783305 (-)
G926001 NA other downstream 1848044 76396348 ~ 76399221 (-)
LOC110511405 NA other downstream 2751881 75491540 ~ 75494143 (-)
G925211 NA other downstream 2961319 75283991 ~ 75284673 (-)
G927317 LOC106610497 other upstream 134626 78382269 ~ 78434096 (-)
G927222 LOC106610501 other upstream 193662 78441305 ~ 78441982 (-)
LOC110497238 LOC106610518 other upstream 259434 78505862 ~ 78510097 (-)

Expression


Co-expression Network