G926949


Basic Information

Item Value
gene id G926949
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78437274 ~ 78439114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1054789
GACCCTGataagatacaggcatccttcctaactcagttgctggagaggaaggaaacagctcaggccaatggtgactttaaaacagttacatagtttaatggctgtgaaaggagaaaacagatgatggatcaacaacgttgtagttactccacaatactaacctaaatgacagagtgaaaagaaaaccTGTAAAGAAAACAATATTACAAAACTgtatttgtcctgaatacaaagccctatgtttggggcaaatcccgAAACAActcatcactgagtaccactcttcatattttcaagcatggtggtagcttcatcacgttatgggtatgctcgtcatcggcaaggacttgggagttttttaggataaaaataaacggaatagagctaaacacaggcaaaatcctagagaaaaacctagTTTTCTGCTTTCcaatagacactgggagacaaattctgctttcagcaggacaataacctaaaacacactggagttgcttaccaagacgacattgaatgttcttaAATCTacatgaaaatctatggcaagacttgaaaacgtctgtctagcaatgatcaacaatcagcttgacagagcttgaagaattttgaaaataataaatgtgcaaatattgtacaatccagctgtgcaaagctcttagaaacttacccagaaagactcacagttgtaatcactgccaaaggtgattataataatgtattgactcaggagtgtgaatacttatgtaaatgagatatttaggctttaacacaacaaaatgtggaataagtcaaggggtatgaatactttctgaaaacaCTGTAGATGTCCAACTGCCATTAGTTGATATGAGAAATAATACATTTCCAACATAGAAGCACAATAGCCAAACCAAAATATGAACTTTAATTGGTTCTTGCTAACTGACCCAGAGAGATGAGACAGATTCATTTTCAGTGTAAGTAGCAAATCTGATATTGCAATGTCATAGGGTGCCTATCCTAGACGGTTTAAACTTTCAAATGACTGATAGTGTTGGGCCCAACATGTGCCTGGACGCTGAGACAGTGCACCCTCCCAAGCATATCTAATAGCTCTGAAAAATTATTAAAACAAGTCAtgtcctacctcatccccatactggtatgtatttatttattttgctcctttgcaccccagtatctctacttgcacattcatcttctgccgatctaccattccagtgtttaattgctatattgtaattacttcgccaccatggcctatttatttccttaacttacctcatttgcactcactgtatatagactttttgttttcttttgttctactgtattattgactatgttttgtttattccatgtgtaactctgtgtcgttgtatgtgtcgaattgctacgctttatcttggccaggtcgcagttgtaaatgataacttgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggcgaaataaaaaaaataaaaaaatgtctggTTTAAACGTTCAACAGCACTGAATAGGTTAAACCCTAGCATAAACTTAAAGCTATCTTTTAGGGCTAGGCCTAAATCTATCAGCCCACACCATTCTATAAATGATCCATTAAACCAACCATGAGGAACATCATTGATCAAAAGTGCGACGAAAGCACAGAACATGAAACAAATTTAAATGAAACTAGACCATAAAACCATAATGTGCGTGACCGCGATAAAACTAAATATAACCTTGCTTTTCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1054789 True 1841 lncRNA 0.37 1 78437274 78439114

Neighbor

gene id symbol gene type direction distance location
LOC118966656 LOC106610525 coding upstream 4509 78389023 ~ 78432765 (+)
LOC118936781 LOC106610525 coding upstream 53202 78355761 ~ 78384072 (+)
LOC118936780 LOC106610496 coding upstream 119670 78294588 ~ 78331698 (+)
LOC110497212 LOC106610528 coding upstream 147441 78265470 ~ 78289833 (+)
LOC110518385 LOC106597144 coding upstream 190936 78215387 ~ 78247524 (+)
LOC118936487 LOC106602251 coding downstream 6631 78445745 ~ 78452257 (+)
LOC110497230 LOC106610523 coding downstream 14896 78454010 ~ 78463872 (+)
LOC110497234 LOC106610520 coding downstream 36849 78475963 ~ 78482853 (+)
LOC110497227 LOC106610465 coding downstream 56237 78495351 ~ 78501627 (+)
LOC110497229 LOC106602251 coding downstream 80536 78519650 ~ 78533161 (+)
G926948 NA non-coding upstream 64 78436943 ~ 78437210 (+)
G926910 NA non-coding upstream 952 78435656 ~ 78436322 (+)
G926942 NA non-coding upstream 19453 78402379 ~ 78417821 (+)
G926922 NA non-coding upstream 101267 78335763 ~ 78336007 (+)
G926950 NA non-coding downstream 94320 78533434 ~ 78533944 (+)
G926979 NA non-coding downstream 95355 78534469 ~ 78534910 (+)
LOC110497242 LOC106610480 non-coding downstream 98492 78535124 ~ 78538309 (+)
G926982 NA non-coding downstream 102817 78541931 ~ 78542255 (+)
LOC110510687 LOC106591138 other upstream 712221 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 983359 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1141265 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 1553032 76869703 ~ 76884980 (+)
G924927 NA other upstream 2877675 75557460 ~ 75562892 (+)
G927061 LOC106602167 other downstream 336821 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 613377 79023569 ~ 79065796 (+)
G927584 NA other downstream 761167 79200281 ~ 79202981 (+)
G927606 NA other downstream 842272 79281386 ~ 79284144 (+)

Expression


Co-expression Network