G926954 (LOC106610479)


Basic Information

Item Value
gene id G926954
gene name LOC106610479
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78555991 ~ 78558069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1054796
CTGCTGGCCGTAGCTGTCCTCCAAGTCGTTGATATACTGGTTTTCCCAGTCCAAACGGATTCCTAGCAAGTCCATGGGATAGAACCCGTTCTCAGCCATGATTACAAAGTATGTGAAGAAGCCGGCTGCGGCCAGCATCACTCCTGTgaagaggaaaaaggaggagagcatttggtaacactttatttgtatagtctgtagagcatccaCAGATGGACTATCTACAGACTAacatcagtaacatttcaaataactatctactaaccctagccctaaccataACTTTACCTTACCCTAACCATGGTAAGCAGTTGCTAATCAACTGTTAGTCTGTTGATAGTATGATGTTTTGTTGATAATACAGATGGACTATCCTAATAAAGTGTGACCAAGTATtttgtcagtgaagacacattgATCAGATTGTAAAAGGCAAAACAGAAGCCCTACCAAATTGACCATAGGCCACACTAATGAGTCTCTCGTTCACCAGTCGGTCTGTTTTGGGGTTCCGTGGCTGTCTCTTCATGATGTCGTTCTCAGCTTGTTCATAGGCCAGGGAGATAGCGGGCATGTCAGTTCCCAGGTCGATGCAGAGGATGGTGACGGTCCCTAGGGCCAGTGGAATGTTGGCGAGGAGCAAGAAGAGGAAGGGGGTCATCTCTGGAATTTTACTGGACAGGGTGTAGGTGATGGACTTCTTCAAGTTGTCAAAGATCAGACGGCCTGGGGGGAAATAGAGGATGGACGGGATAGTCAGGGTGATGACAGAAGGATGGAAAGACACAGCAGATTGATAATCATCTGTGCAGAGCTCCTCATACCCTCTTCAACACCAGTCACGATGGAGGCAAAGTTGTCATCCAGGAGGATCATGTCTGCAGCCTGCTTGGAGACGTCAGATCCAGCGATACCCATAGCAACACCGATGTCAGCCTTCCTCAGAGCAGGGGAATCGTTCACACCATCCCCTGTCACAGCCACAATGGCCCCCTGTGGATAAGTAAGAGAGGTGTTTAgtaggatcggacccttttttcaattttctcctaaaatgacatacccaaatctaactgcctgtagctcaggaccggaagcaaggatatgcatattcttgatacaatttgaaaggaaacactttgaagtttgtggaaattttAAATGAAtgcaggagaatataacacattagatctggtaaaagataatacaaagaaaaaaacatgcattttttgtattttttctgtaccatcatctttgaaagagaaaggccataatgtattattctagCCCAGtcacaatttagattttgaccactagatggcagcattgtatgtgcaaagttttagactgatcaaatgaaccattgtattttgGTTTAAAATGTTGTataagactgcccaaatgtgcgtAATAATAGTTTAATAATAactttcaagttcataactgtgcgctatcctcaaacaacagcatggtattatttcattgtaatagctactgtaaattggacagtgtagttagattaacaaaaATGTAAGCTTTCTTCCaaaatcagatatgtctatgtccttggaaatgttcttgttacttacaacctcatgctaatcgcgttagcctatgttagctcaaccatcccatgGGGAACCCaccaatcctgtagaggttaaagaTCTTAGCAATGAAAGATACAATGATCCTGACTGACTCATAAGCATGGATTCATTAACTCAATAGTACCTGACGCTGGCAACCCTCCACAATAATCAGCTTCTGCTGAGGAGAAGTTCTGGCAAACACAATCTCAGTGTGATGCTTCAGGATGTCATCCAACTCTTCGGGGGTCATGTCCTTCAGCTCTCCACCGTGGACAACACAGGCCTTGGCATCTCTGCATGGC

Function

NR:

description
sodium/potassium-transporting ATPase subunit alpha-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1054796 True 1894 lncRNA 0.43 2 78555991 78558069

Neighbor

gene id symbol gene type direction distance location
LOC110497242 LOC106610480 coding upstream 17682 78535124 ~ 78538309 (+)
LOC110497229 LOC106602251 coding upstream 22830 78519650 ~ 78533161 (+)
LOC110497227 LOC106610465 coding upstream 54364 78495351 ~ 78501627 (+)
LOC110497234 LOC106610520 coding upstream 73138 78475963 ~ 78482853 (+)
LOC110497230 LOC106610523 coding upstream 92119 78454010 ~ 78463872 (+)
LOC118966657 LOC106602244 coding downstream 76091 78634160 ~ 78643493 (+)
LOC110534505 NA coding downstream 165989 78724058 ~ 78727002 (+)
LOC110497250 LOC106602246 coding downstream 168930 78726999 ~ 78730160 (+)
LOC110534589 LOC106610450 coding downstream 217811 78775880 ~ 78777576 (+)
LOC118966658 NA coding downstream 228689 78786758 ~ 78787742 (+)
G926982 NA non-coding upstream 13736 78541931 ~ 78542255 (+)
G926979 NA non-coding upstream 21081 78534469 ~ 78534910 (+)
G926950 NA non-coding upstream 22047 78533434 ~ 78533944 (+)
G926988 NA non-coding downstream 15427 78573496 ~ 78576401 (+)
G926994 NA non-coding downstream 28612 78586681 ~ 78587098 (+)
G926999 NA non-coding downstream 34051 78592120 ~ 78592968 (+)
G927006 NA non-coding downstream 48270 78606339 ~ 78607496 (+)
G927013 NA non-coding downstream 60091 78618160 ~ 78678777 (+)
LOC110510687 LOC106591138 other upstream 830938 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1102076 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1259982 77293833 ~ 77296009 (+)
LOC110531901 LOC106610543 other upstream 1671749 76869703 ~ 76884980 (+)
G927061 LOC106602167 other downstream 217866 78775935 ~ 78787563 (+)
LOC110515636 LOC105020871 other downstream 494422 79023569 ~ 79065796 (+)
G927584 NA other downstream 642212 79200281 ~ 79202981 (+)
G927606 NA other downstream 723317 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 1039576 79597075 ~ 79601686 (+)

Expression


Co-expression Network