G927477


Basic Information

Item Value
gene id G927477
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78939625 ~ 78941438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1055527
TTACCTGGTAAATGTACATTAAAACTAGTTGGGATTACCTGGTAAGTGTACATTAAAACTAGTTGGGATTACCTGGTAAGTGTACATTAAAACTAGTTGGAGTTACCTGGTAAGTGTACATTAAAACTAGTTGGGATTACCTGGTAAGTGTACATTAAACTAGTTGGAGTTACCTGGAAAAAGTGTACATTAAAACTAGTTGAGGTTACCTGGTAAGTAAGGTTTCTGAGCTGGTTTTTAACCAGTAAACTAGCAGGATTTTTAGAAACCACCAcagtgtgtattggtgaaataacagttggGTTTCAGTCTGTCAATAGTAAAGAAACACGGTTCAGGTCCAACATTCAGAATAGTCCAAACAGAGCTGCTTGTTACAGTAACATCGGAACAACGGAATCATAGAATCAGAACGTAGAATTTCAGAACTCGATTCTCATACCACTGAATGGGACATGATTGAACCACTTCATTACACAAGCCTGTTTCTCTTCTACAGCAGAATGGCTACGTCCCACCCTGTTTCATAcacatagcgcactactttagaccagctcTGGAcaaaacgtagtgcactatataggaaatagggtgtcatttgggacacagtcaaaCAAGATACATACATTAAGTCTCTTCCACCGTTACATTCTTTGGGCTGGGTGTATATCAGTGATGTGGAAATAACACAACAATAACAGTTTTTCAGCAATAAAACTCACAAAACACTAAAACTGAAGGACCTGAATTTGCTGAGGGATGTGTGTCAGAAGGGTAGTGatgtcaaagtgtgtgtgtgtgtgtgtgtgtgtgagacacacaCTTTGTCATAGCTTCGTAGGTAATGGATTCCCCATGAAACCATGCGTCAAGTCTAAGCATTAATACCTTGATGTCCTTAATCCACAGGAACACAGTGGCGGTTGTTGTCGTGGCACAACGCTCAGTCTCACACTAACACGTATTCAGGTTGGGCTGCATCTCTCCTGGGCGTCGTCATCATCACCAGCCCAAACACAGAGGAAGATTCTAGACTATTCACTAGTCATCATCGTTACTGCAACGCATGAACTGATTGGCTGTTCCCGTGTGATACAGGAAGTAGAACAAAACGAAGAGGAGAAATGACCAAACACATGcctacactctctccctctccactctgtTCTTCGAGACAAGAACAATCACAGACGTTCTGGGAAGTCCTTTTTCCAAACAACAcactcctcctgtcctgtccaagACTTTCACTGTTAGATATGTCTTCACTGTTACATTACTGACTGACCGACCActgaccagacctggatcaaatatcaactgactactgaccagacctggatcaaatatcAACTGACTACTGACCAGGCCTGGATCAAATATCAACTGACTACTGACTAGACCTGGATCAAATATCAActgaccagacctggatcaaatatcaactgactactgaccagacctggatcaaatatcaactgactactgaccagacctggatcaaatatcAACTGACCAGGCCTGGATCAAATATCAACTGACTActgaccagacctggatcaaatatcAACTGACCAGACATGGATCAAATATCAACTGACCAGACATGGATCAAATATCAActgaccagacctggatcaaatatcaactgaccagacctggatcaaatatcaactgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1055527 True 1679 lncRNA 0.42 2 78939625 78941438

Neighbor

gene id symbol gene type direction distance location
LOC118936936 NA coding downstream 72704 78864883 ~ 78866921 (-)
LOC110498601 smc2 coding downstream 76951 78816477 ~ 78862674 (-)
LOC118936787 NA coding downstream 121660 78817299 ~ 78817965 (-)
LOC118936786 LOC106610904 coding downstream 135280 78803762 ~ 78804351 (-)
LOC118936785 NA coding downstream 182885 78755860 ~ 78756740 (-)
LOC110516210 LOC106591942 coding upstream 7008 78942892 ~ 79011434 (-)
LOC118937053 NA coding upstream 139303 79080741 ~ 79080830 (-)
LOC118936972 NA coding upstream 140053 79081491 ~ 79081654 (-)
LOC118937011 NA coding upstream 142188 79083626 ~ 79083787 (-)
LOC118936973 NA coding upstream 144082 79085520 ~ 79085683 (-)
G927478 NA non-coding downstream 426 78891942 ~ 78939199 (-)
G927488 NA non-coding downstream 57901 78881252 ~ 78881724 (-)
G927464 NA non-coding downstream 79040 78815492 ~ 78860585 (-)
G927433 NA non-coding downstream 225402 78713650 ~ 78714223 (-)
G927514 NA non-coding upstream 23627 78965065 ~ 78976413 (-)
G927522 NA non-coding upstream 45240 78986678 ~ 78987070 (-)
G927523 NA non-coding upstream 52298 78993736 ~ 78995164 (-)
G927528 NA non-coding upstream 58122 78999560 ~ 79001614 (-)
LOC110497238 LOC106610518 other downstream 429694 78505862 ~ 78510097 (-)
LOC110497224 LOC106610522 other downstream 465566 78464404 ~ 78474168 (-)
LOC110497241 LOC106610501 other downstream 494484 78440760 ~ 78445626 (-)
G927222 LOC106610501 other downstream 497643 78441305 ~ 78441982 (-)
G927317 LOC106610497 other downstream 505529 78382269 ~ 78434096 (-)
G927654 LOC106591987 other upstream 277077 79218515 ~ 79222867 (-)
LOC110511089 LOC106591771 other upstream 289733 79222288 ~ 79237169 (-)
G927673 NA other upstream 333255 79274693 ~ 79281790 (-)
G927893 NA other upstream 430678 79372116 ~ 79372872 (-)
G927948 LOC106602109 other upstream 614532 79554714 ~ 79559828 (-)

Expression


Co-expression Network