G927109


Basic Information

Item Value
gene id G927109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78952006 ~ 79021764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1055006
ATTCTTTGTGTGTTCTGACAGTAGTAGTTCAGTCCTCTCGACTACTTTCCTAAAGGAAGGTCTCTTCAGAGGGTCCTCACTCCAACAGGACAACATCATGTCAtaactggagagagacagagagagagagacagacagagaaacagacagacagagaaacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagaaacagacagagaaacagacagacagacagagaaacagacagacagacagacagagaaacagacagacagacagagaaacagacagagaaacagacagacaga
>TU1055008
ATTCTTTGTGTGTTCTGACAGTAGTAGTTCAGTCCTCTCGACTACTTTCCTAAAGGAAGGTCTCTTCAGAGGGTCCTCACTCCAACAGGACAACATCATGTCAtaactggagagagacagagagagagagacagacagagaaacagacagacagagaaacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagaaacagacagagaaacagacagacagacagagaaacagacagagaaacagacagacaga
>TU1055009
CGTGTGTGGGGGAGTTCACAGTAGAACCAGCTGATTTTAGGGGTCGGGTAACCGGCGGCAACGCAGCGCACCTGTCCATCAACTGGTCCCTCCTGGGAAATAATGACAGGcttacctgagagagagagcgacagagagagaaacagagaaacagacagacagagaaacagacagacagacagacagacagacagacagacagacagacagacagagaaacagacagacagacagagaaacagacagacagagaaacagacagacagacagacagacagacagacagacagagaaacagaca

Function

NR:

description
PREDICTED: mast/stem cell growth factor receptor kita-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1055006 False 391 lncRNA 0.46 4 78952006 78982595
TU1055008 False 347 lncRNA 0.46 3 78952006 78982455
TU1055009 True 301 lncRNA 0.50 3 78982045 79021764

Neighbor

gene id symbol gene type direction distance location
LOC110516209 NA coding upstream 9651 78939438 ~ 78942355 (+)
LOC110513597 LOC107093492 coding upstream 16336 78885272 ~ 78937306 (+)
LOC118936788 LOC106591635 coding upstream 70810 78874786 ~ 78881196 (+)
LOC110534603 LOC106602125 coding upstream 135568 78805794 ~ 78816438 (+)
LOC118966658 NA coding upstream 164264 78786758 ~ 78787742 (+)
LOC110515636 LOC105020871 coding downstream 1805 79023569 ~ 79065796 (+)
LOC110513572 LOC106596357 coding downstream 137743 79159507 ~ 79164674 (+)
LOC110513571 LOC106602128 coding downstream 145940 79167704 ~ 79171045 (+)
LOC118936792 NA coding downstream 186102 79207866 ~ 79209040 (+)
LOC118936979 NA coding downstream 223570 79245334 ~ 79245497 (+)
G927105 NA non-coding upstream 21131 78929146 ~ 78930875 (+)
G927098 NA non-coding upstream 43485 78908122 ~ 78908521 (+)
G927080 LOC106610560 non-coding upstream 97841 78848904 ~ 78854165 (+)
G927077 NA non-coding upstream 117599 78834156 ~ 78834407 (+)
G927550 NA non-coding downstream 45860 79067624 ~ 79067968 (+)
G927551 NA non-coding downstream 47014 79068778 ~ 79069054 (+)
G927555 NA non-coding downstream 49190 79070954 ~ 79071306 (+)
G927560 NA non-coding downstream 53879 79075643 ~ 79076371 (+)
G927562 NA non-coding downstream 72503 79094267 ~ 79094699 (+)
G927061 LOC106602167 other upstream 164443 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 421405 78519650 ~ 78533161 (+)
LOC110510687 LOC106591138 other upstream 1226953 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1498091 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1655997 77293833 ~ 77296009 (+)
G927584 NA other downstream 178517 79200281 ~ 79202981 (+)
G927606 NA other downstream 259622 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 575881 79597075 ~ 79601686 (+)
LOC110532970 LOC105020822 other downstream 705281 79727045 ~ 79782057 (+)

Expression


Co-expression Network