G927124


Basic Information

Item Value
gene id G927124
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78999965 ~ 79001000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1055036
AAGACGAAGCGTGGTCAGACCAAGCATGCTGCTTAAGACCCCTGGACCACGGCAGTTCACAACGCTCCAACAAGCCGAGAGAATACTTGATGGAAGCTTATTTTGTTTAAAGCcatagccctgaccttaaccactcagaatgaatacctaaactaacCTTccccccaaaccatagccctgaccttaaccactcagaatgaataccttcccccaaaccatagccctgaccttaaccactcagaatgaataccttccccccaaaccatagccctgaccttaaccactcagaatgaataccttcccccaaaccatagccctgaccttaaccactcagaatgaataccttcccccaaaaccatagccctgaccttaaccactcagaatgaatacctgaACTAACCTtcccccaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacCTTccccccaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacccttttgttttaaccctgtaaccacgtggaattaaccctgtaaccacgcggagttaaccctgtaaccacacggagttaaccctgtaaccatgcagaattaaccctgtaaccatcctgaattaaccctgtaaccatgcagaattaaccctgtaaccatgcagaattaaccctgtaaccatgcag
>TU1055037
AAGACGAAGCGTGGTCAGACCAAGCATGCTGCTTAAGACCCCTGGACCACGGCAGTTCACAACGCTCCAACAAGCCGAGAGAATACTTGATGGAAGCTTATTTTGTTTAAAGCcatagccctgaccttaaccactcagaatgaatacctaaactaacCTTccccccaaaccatagccctgaccttaaccactcagaatgaataccttcccccaaaccatagccctgaccttaaccactcagaatgaataccttcccccaaaaccatagccctgaccttaaccactcagaatgaataccttccccccaaaccatagccctgaccttaaccactcagaatgaataccttccccccaaaccatagccctgaccttaaccactcagaatgaataccttcccccaaaaccatagccctgaccttaaccactcagaatgaatacctgaACTAACCTtcccccaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacCTTccccccaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacccttttgttttaaccctgtaaccacgtggaattaaccctgtaaccacgcggagttaaccctgtaaccacacggagttaaccctgtaaccatgcagaattaaccctgtaaccatcctgaattaaccctgtaaccatgcagaattaaccctgtaaccatgcagaattaaccctgtaaccatgcag
>TU1055038
AAGACGAAGCGTGGTCAGACCAAGCATGCTGCTTAAGACCCCTGGACCACGGCAGTTCACAACGCTCCAACAAGCCGAGAGAATACTTGATGGAAGCTTATTTTGTTTAAAGCcatagccctgaccttaaccactcagaatgaatacctaaactaacCTTccccccaaaccatagccctgaccttaaccactcagaatgaataccttcccccaaaccatagccctgaccttaaccactcagaatgaataccttcccccaaaaccatagccctgaccttaaccactcagaatgaatacctgaACTAACCTtcccccaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacCTTccccccaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacccttttgttttaaccctgtaaccacgtggaattaaccctgtaaccacgcggagttaaccctgtaaccacacggagttaaccctgtaaccatgcagaattaaccctgtaaccatcctgaattaaccctgtaaccatgcagaattaaccctgtaaccatgcagaattaaccctgtaaccatgcag
>TU1055039
AAGACGAAGCGTGGTCAGACCAAGCATGCTGCTTAAGACCCCTGGACCACGGCAGTTCACAACGCTCCAACAAGCCGAGAGAATACTTGATGGAAGCTTATTTTGTTTAAAGCcatagccctgaccttaaccactcagaatgaataccttcccccaaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacCTTccccccaaaccatagccctgaccttaaccactcagaatgaatacctgaACTAACCTtcccccaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacCTTccccccaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacccttttgttttaaccctgtaaccacgtggaattaaccctgtaaccacgcggagttaaccctgtaaccacacggagttaaccctgtaaccatgcagaattaaccctgtaaccatcctgaattaaccctgtaaccatgcagaattaaccctgtaaccatgcagaattaaccctgtaaccatgcag
>TU1055040
AAGACGAAGCGTGGTCAGACCAAGCATGCTGCTTAAGACCCCTGGACCACGGCAGTTCACAACGCTCCAACAAGCCGAGAGAATACTTGATGGAAGCTTATTTTGTTTAAAGCcatagccctgaccttaaccactcagaatgaataccttcccccaaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacCTTccccccaaaccatagccctgaccttaaccactcagaatgaataccttcccccccaaaccatagccctgaccttaaccactcagaatgaatacctgaACTAACCTtcccccaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacCTTccccccaaaccatagccctgaccttaaccactcagaatgaatacctaaactaacccttttgttttaaccctgtaaccacgtggaattaaccctgtaaccacgcggagttaaccctgtaaccacacggagttaaccctgtaaccatgcagaattaaccctgtaaccatcctgaattaaccctgtaaccatgcagaattaaccctgtaaccatgcagaattaaccctgtaaccatgcag

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1055036 False 696 lncRNA 0.46 3 78999965 79001000
TU1055037 False 744 lncRNA 0.46 2 78999965 79001000
TU1055038 False 603 lncRNA 0.46 2 78999965 79001000
TU1055039 False 557 lncRNA 0.46 3 78999965 79001000
TU1055040 True 605 lncRNA 0.46 2 78999965 79001000

Neighbor

gene id symbol gene type direction distance location
LOC118936789 NA coding upstream 4152 78994971 ~ 78995813 (+)
LOC110517676 NA coding upstream 5123 78984364 ~ 78994842 (+)
LOC110516209 NA coding upstream 57610 78939438 ~ 78942355 (+)
LOC110513597 LOC107093492 coding upstream 64295 78885272 ~ 78937306 (+)
LOC118936788 LOC106591635 coding upstream 118769 78874786 ~ 78881196 (+)
LOC118936790 NA coding downstream 2690 79003589 ~ 79004205 (+)
LOC110515636 LOC105020871 coding downstream 22569 79023569 ~ 79065796 (+)
LOC110513572 LOC106596357 coding downstream 158507 79159507 ~ 79164674 (+)
LOC110513571 LOC106602128 coding downstream 166704 79167704 ~ 79171045 (+)
LOC118936792 NA coding downstream 206866 79207866 ~ 79209040 (+)
G927117 NA non-coding upstream 32243 78965254 ~ 78967722 (+)
G927105 NA non-coding upstream 69090 78929146 ~ 78930875 (+)
G927098 NA non-coding upstream 91444 78908122 ~ 78908521 (+)
G927080 LOC106610560 non-coding upstream 145800 78848904 ~ 78854165 (+)
G927550 NA non-coding downstream 66624 79067624 ~ 79067968 (+)
G927551 NA non-coding downstream 67778 79068778 ~ 79069054 (+)
G927555 NA non-coding downstream 69954 79070954 ~ 79071306 (+)
G927560 NA non-coding downstream 74643 79075643 ~ 79076371 (+)
G927061 LOC106602167 other upstream 212402 78775935 ~ 78787563 (+)
LOC110497229 LOC106602251 other upstream 469364 78519650 ~ 78533161 (+)
LOC110510687 LOC106591138 other upstream 1274912 77722229 ~ 77734491 (+)
LOC110534594 LOC106577279 other upstream 1546050 77360360 ~ 77632808 (+)
G926448 LOC105024706 other upstream 1703956 77293833 ~ 77296009 (+)
G927584 NA other downstream 199281 79200281 ~ 79202981 (+)
G927606 NA other downstream 280386 79281386 ~ 79284144 (+)
LOC110514189 LOC106593948 other downstream 596645 79597075 ~ 79601686 (+)
LOC110532970 LOC105020822 other downstream 726045 79727045 ~ 79782057 (+)

Expression


Co-expression Network