G927647


Basic Information

Item Value
gene id G927647
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79191947 ~ 79194251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1055740
CTGGTGTGTAAGGGGTGAAGTTCACAATGGGTGCCGAGACTATCGCACGGTGGCAGTAGAGAGACACCGATGAAGTGTGTATCGGTCTTGCTGGTGGCTGGCAGCGACGACAGAGCAGAGCGTGACATGCCAGTGTTTTTTCCTGATGGGATGTGTTTTCTTGGTCTTGGATCCACGGAGTGATGGCAGAATGTTCCATTTATTCTATGGCTCTTTCCTTCCCGTCTTATTTCTGCCACCATGGCATGATCCAGAGCAGGGCGGTGTAACTGGGTGATTCAACATCACTGTTATAGTGATGGGAAGAGACACGGAGGATTTTGCAACAAGTGCAAGTAGGAAAACAGTCATTACACCTTTCCCCTTCATAATCAACGCAGTTCTCTCTGGCAGTGTTCAAGCCTCAGCAGCAGTCAATCGGAGTGTTTATGACTTCTGGCTGATTTGTTCTTTTTCTGATGATGACGGTTGGCAGCTCCCTTCTGGTTTCGTTTTACAGCTCAGAGTGTCAGTGAGTAGAGACACAGTGCTGGTTTTATAGTGACTTGTATTTCCATTCACTTACATCCACGGTTTTATCCAACCGAGGTCTTTTTATCCAGTCAACGCGTTATATCCGACCGAGGCCGTTATATCCAAACGAGGCCGTTTTATCCAACCAAGGTTGTTTCTCAGTTTCGGGCTGGGATGGAAATGAGTCAAACGACTTCAAGCTTTGACAGCTTTGAAATAATAGCCAGGGGAGAAGTTCACTCTGGCACTGAGTTCGTGTAGTGGAGGCTCAGGACGGCTCTGCTTCGTGTAGAGGAAGCCCCTGGAAATTGACAACACATAAGACTTGTGCTGTTTCATACTGTCATACTCTGCCTTGCTAAATGTCTATTCTGTCCATGACCGAGGTGAAATAATATTGAAATTTGATTATAAAAACATGACTATTTTCTGGTTGGTATGTTTCTGTTTTAATCAACAAAGCGCATTGTACACATAATCATACATAGATACGGTTTCGGGCTGGGATGGAATTTCATAAATTTCAAGCTTTGACAAGTTTAGAAATAACAGTCACGGGAGATGTTCACTCTTGCACCGTCGCTGACAGACTGAGAGCATTTTTACATAGTCACTATGAAAATATAGACCTTAAATGATGTTTTTTTTGTAAAAGAAAATATTGTGTGTATTTTTCTCTAGTCTTTTAATCTCTGTGTGTCTATcgctttctctgtgtgtgtgtgtgtgtgtctgtgtgtgcgtacatgctcttttgtgtgtgtttgtgtgtgtgtgtgaattggtGAGATAATTTCTAAATAATGACTTAATTTGTATCACATTATTCTTGGTCAGTGTATTCCatacctctcctctgggacccccACATTTTAGTTGCCCTTTAGAGCAACTGATTCTGATTCTTCTCATGAACTCATCATCAAGCCTTTTGATTGGTAGAATCAGGTGTGAGTTAGTGTTAGGGGGGCAAAAATaagtttagctagctggctaagtcTGTCACATTTACAGAAATGTTGATTGATATGCGATATCCCTGTCAAATACATTTTCGATTAATGCAT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1055740 True 1580 lncRNA 0.42 2 79191947 79194251

Neighbor

gene id symbol gene type direction distance location
LOC118936937 NA coding downstream 4171 79186013 ~ 79187776 (-)
LOC110513570 NA coding downstream 8384 79175205 ~ 79183563 (-)
LOC118937062 NA coding downstream 33510 79158274 ~ 79158437 (-)
LOC118937050 NA coding downstream 35274 79155529 ~ 79156778 (-)
LOC118937039 NA coding downstream 37074 79154710 ~ 79154873 (-)
LOC110511088 LOC106592313 coding upstream 18544 79212795 ~ 79222203 (-)
LOC110511089 LOC106591771 coding upstream 28037 79222288 ~ 79237169 (-)
LOC118936793 LOC106591370 coding upstream 96940 79291191 ~ 79330506 (-)
LOC110531688 lrpap1 coding upstream 592379 79786630 ~ 79802558 (-)
LOC118936938 LOC106610425 coding upstream 896311 80090562 ~ 80094309 (-)
G927659 NA non-coding downstream 18916 79172815 ~ 79173031 (-)
G927658 NA non-coding downstream 19147 79172547 ~ 79172800 (-)
G927652 NA non-coding downstream 21080 79170363 ~ 79170867 (-)
G927676 NA non-coding upstream 81934 79276185 ~ 79281152 (-)
G927693 NA non-coding upstream 127332 79321583 ~ 79321962 (-)
G927879 NA non-coding upstream 141260 79335511 ~ 79335721 (-)
G927891 NA non-coding upstream 176327 79370578 ~ 79377153 (-)
G927893 NA non-coding upstream 177865 79372116 ~ 79372872 (-)
LOC110497238 LOC106610518 other downstream 682016 78505862 ~ 78510097 (-)
LOC110497224 LOC106610522 other downstream 717888 78464404 ~ 78474168 (-)
LOC110497241 LOC106610501 other downstream 746806 78440760 ~ 78445626 (-)
G927222 LOC106610501 other downstream 749965 78441305 ~ 78441982 (-)
G927317 LOC106610497 other downstream 757851 78382269 ~ 78434096 (-)
G927654 LOC106591987 other upstream 24264 79218515 ~ 79222867 (-)
G927673 NA other upstream 80442 79274693 ~ 79281790 (-)
G927948 LOC106602109 other upstream 361719 79554714 ~ 79559828 (-)

Expression


Co-expression Network