G927980 (LOC106591517)


Basic Information

Item Value
gene id G927980
gene name LOC106591517
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79586078 ~ 79587865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1056215
ccacctggATCTCTGCCTCCTGCAGATGGAACCCGTCCAGGAACACTGAGTCGTCGGCCATTAGAACCCTGTCCAGCTCCTCCTCAGAGAGCAGGTTGGGGTTGCTGTGGGAACGGCCTCTCCCCTTATGGTACGGGGGGAACTCTGGCTCTGACAGGGGCCTCGCAGGCTTGGCCGACGCAGACGAGGAAGAGGAGGcacggggaggaggaggaggaggagcgatGACCCTGTctttaggattaggtttagggtcaAGGTCGATGTCTACCTTTCTCTGAGCTGCTGGAGGAGTGTGAAGAGTTGTCAAAGATCATGTTGAATATTCCTCCAGACTGCATCTCCGCCACCACCCTCTCTGCCCTGTTAATACCCAGGGTCTTAGAGTCCAGCTTGGGCTTGAACCAgccaccaccccctcctcctcctcctcctcctcctacaccGCCTCCGCTGGCGCTGTTACCACGGGAACCAGGCTTCACGTTTTTGTTGTTTCCTCCTCCGCTGCTGCTGTTATGGAAACCACACAACTCCTCGTCGCTGGAGCACGAGTCCGCGGCGGCTGCCGCTCCTCCGGCTGGACTTCCCGAATTGTTCCCGTGGCGACGGTTGCGGTTGGTACCGCCGTGTCCGTGACGACGGCCACCCCGGTCTCCCTCGGCGACGACCAGTAGCAGAACCCCCGTGCATCGGCCAATCAGCTTGACGACGTCCTCGTGCGACGCCCCGGAGACGTTGATGTCGTTCACGGACAGGATGTGGTCACCGGAGCGGAGACCCACGTAGTCCGCCGGACTTCCTTTTAGAATGCAGTTGAGGACACAGGGGCCCTGGCCAGAGAGGGTGAACCCATAGCCTGCCCTCCCGCGGGCCACCTCCACCCCCCGGATACGCCCACCCTGGTGGGGGTGAGGAGGCGAGGGTAAGGCTGTGAGACCCCCACGTCCTCCATGACGTCTCTTGGACGAGGTGTCCGTCTGTCTGAACATTGTTTTGACTCTCGTTGTTCTGTTATTTAATGTAATTTATCCAACCCTTATGTTACCAGgtaagttgactgatgTTATTTATCCAACCCTTATGTTACCAGGTAAGTTAACTGATGTTATTTATaagaggagagaggttgaAAAGACTCATGTGAGTTTCTCAATTCCATTCAATGAGCTTTACTGGCATGGTAAGTCAATGAGATGCATTGTGAACGAGAACTGTTGTTTCTTTTGATGAGGCttaatctctctcctctcctcccttctctatcctctctctctctctctcctctctctctctcgtttcacTGTCAAgggctgtctgtctccctctaaggcttttcctccctctctcgttctagTGTTGAGGGCTTTCTAAAAAATGTGTCAGGAGGGTGAGAGCATGACG
>TU1056216
ccacctggATCTCTGCCTCCTGCAGATGGAACCCGTCCAGGAACACTGAGTCGTCGGCCATTAGAACCCTGTCCAGCTCCTCCTCAGAGAGCAGGTTGGGGTTGCTGTGGGAACGGCCTCTCCCCTTATGGTACGGGGGGAACTCTGGCTCTGACAGGGGCCTCGCAGGCTTGGCCGACGCAGACGAGGAAGAGGAGGcacggggaggaggaggaggaggagcgatGACCCTGTctttaggattaggtttagggtcaAGGTCGATGTCTACCTTTCTCTGAGCTGCTGGAGGAGTGTGAAGAGTTGTCAAAGATCATGTTGAATATTCCTCCAGACTGCATCTCCGCCACCACCCTCTCTGCCCTGTTAATACCCAGGGTCTTAGAGTCCAGCTTGGGCTTGAACCAgccaccaccccctcctcctcctcctcctcctcctacaccGCCTCCGCTGGCGCTGTTACCACGGGAACCAGGCTTCACGTTTTTGTTGTTTCCTCCTCCGCTGCTGCTGTTATGGAAACCACACAACTCCTCGTCGCTGGAGCACGAGTCCGCGGCGGCTGCCGCTCCTCCGGCTGGACTTCCCGAATTGTTCCCGTGGCGACGGTTGCGGTTGGTACCGCCGTGTCCGTGACGACGGCCACCCCGGTCTCCCTCGGCGACGACCAGTAGCAGAACCCCCGTGCATCGGCCAATCAGCTTGACGACGTCCTCGTGCGACGCCCCGGAGACGTTGATGTCGTTCACGGACAGGATGTGGTCACCGGAGCGGAGACCCACGTAGTCCGCCGGACTTCCTTTTAGAATGCAGTTGAGGACACAGGGGCCCTGGCCAGAGAGGGTGAACCCATAGCCTGCCCTCCCGCGGGCCACCTCCACCCCCCGGATACGCCCACCCTGGTGGGGGTGAGGAGGCGAGGGTAAGGCTGTGAGACCCCCACGTCCTCCATGACGTCTCTTGGACGAGGTGTCCGTCTGTCTGAACATTGTTTTGACTCTCGTTGTTCTGTTATTTAATGTAATTTATCCAACCCTTATGTTACCAGGTAGGTTGACTGAAGTGATTTATCCAAACCTTAtgttaccagGTAAGTTGCCTGATGTTATTTATCCAACCCTTATGTTACCAGGTAAGTTAACTGATGTTATTTATaagaggagagaggttgaAAAGACTCATGTGAGTTTCTCAATTCCATTCAATGAGCTTTACTGGCATGGTAAGTCAATGAGATGCATTGTGAACGAGAACTGTTGTTTCTTTTGATGAGGCttaatctctctcctctcctcccttctctatcctctctctctctctctcctctctctctctcgtttcacTGTCAAgggctgtctgtctccctctaaggcttttcctccctctctcgttctagTGTTGAGGGCTTTCTAAAAAATGTGTCAGGAGGGTGAGAGCATGACG

Function

NR:

description
regulator of G-protein signaling 12-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1056215 False 1404 TUCP 0.56 5 79586078 79587865
TU1056216 True 1446 TUCP 0.55 4 79586078 79587865

Neighbor

gene id symbol gene type direction distance location
LOC118936793 LOC106591370 coding downstream 255572 79291191 ~ 79330506 (-)
LOC110511089 LOC106591771 coding downstream 348909 79222288 ~ 79237169 (-)
LOC110511088 LOC106592313 coding downstream 363875 79212795 ~ 79222203 (-)
LOC118936937 NA coding downstream 398302 79186013 ~ 79187776 (-)
LOC110513570 NA coding downstream 402515 79175205 ~ 79183563 (-)
LOC110531688 lrpap1 coding upstream 198765 79786630 ~ 79802558 (-)
LOC118936938 LOC106610425 coding upstream 502697 80090562 ~ 80094309 (-)
LOC118936799 LOC106610425 coding upstream 554829 80142694 ~ 80145965 (-)
LOC118936800 LOC106610425 coding upstream 572748 80160613 ~ 80163884 (-)
LOC110519670 LOC106610423 coding upstream 657218 80245083 ~ 80349169 (-)
G927944 NA non-coding downstream 6601 79576642 ~ 79579477 (-)
G927943 NA non-coding downstream 10028 79574822 ~ 79576050 (-)
G927972 LOC106596941 non-coding downstream 15391 79569265 ~ 79570687 (-)
G927948 LOC106602109 non-coding downstream 26250 79554714 ~ 79559828 (-)
G927964 NA non-coding downstream 37014 79548225 ~ 79549064 (-)
G927986 NA non-coding upstream 11089 79598954 ~ 79599363 (-)
G928019 NA non-coding upstream 85541 79673406 ~ 79675942 (-)
G928023 NA non-coding upstream 93597 79681462 ~ 79681855 (-)
G928032 NA non-coding upstream 111974 79699839 ~ 79701229 (-)
G928029 NA non-coding upstream 114319 79702184 ~ 79702554 (-)
G927893 NA other downstream 213206 79372116 ~ 79372872 (-)
G927673 NA other downstream 304288 79274693 ~ 79281790 (-)
G927654 LOC106591987 other downstream 363211 79218515 ~ 79222867 (-)
LOC110517091 pi4k2b other upstream 1016904 80580548 ~ 80610829 (-)
G928558 LOC106590778 other upstream 1060511 80648376 ~ 80652202 (-)
LOC110516987 LOC106597865 other upstream 1065127 80652992 ~ 80687561 (-)
G929479 NA other upstream 1135630 80723495 ~ 80724244 (-)
G929489 NA other upstream 1159605 80747470 ~ 80747858 (-)

Expression


Co-expression Network