G927804


Basic Information

Item Value
gene id G927804
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79784422 ~ 79785699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1055945
TTTCCAGTGACTGTTGTTCGTTGTCATGGTGCCAGAAACAGGTTTTATGTTCCATTCCCATGTGAACTACACACGATTCATCAGCAAGGCTTTAAACATATGTTTAGGCCTACAATAGTAATTCTGTTAAATTGTGTTATGCTCATTGTGTACCAATTTCGTCAAAATATCCAGATGACGAGAAAATGGGAGAAAAGGTGTTTTATTGCTTTTTGGAAAATTTGTTTCGATCTATATTTGATTCATTtttgtttattacagtgttttgcaTCTTCAGGATGCCCCGCCCACATGGGCCAATAAGACTGGTTCAAAGACTGTTAACATCGATTTACAATCATGACACTGGTTCTCTCCGATTGGTTAATACAGCCCCTTGTGTTACAGCtttaatttaaaatggattcaatttagattATTTTTCTCCACAATACTCCATCATAAtttttttgattaaaaaaatgaaaagctgaaatgttcatgagtcaagtattcaaccccattgTTATATCAAGGCTAATTAAGTGCCGTAGTAAATATGTACTTAAAGCCACATCAGTTACAAGGACTCACTCTGTCTGCAAGGACAGTGTTCAACATGACTGCTGAATGACTGACTACCTCATCACTccaaccccacacatacagataattgtaaggtccttCAAATCGAGCtgtgaatttcaaccacaaaagaccagagaggttttacAATAACCTCGCAAAAAGAAGGGCACCTCATTTTGGTAGATGAATAAAACGCtgaaagcagacattgaatatcaacACACCAAGTCACTACAAAAGATTCAGGCGTCCGTCCTAACCGAGTTGCCAGAGAGGATGGAAACCGCTCGGGGATTTCACCATTAGGCCAAAGGTCACGGAGGAGTTCTTGAGATTTTCTGATATACCAATGATCCTATGTGTTACCATGGCGATGTCGTCAAATCCACTGATACCGCGCGTTACTACGGCGATGTCGTCAAATCCACTGATACCGCGCGTTACTACGGCGATGTCGTCAAATCCACTGATACCGCGCGTTAC
>TU1055946
gaaatgttcatgagtcaagtattcaaccccattgTTATATCAAGGCTAATTAAGTGCCGTAGTAAATATGTACTTAAAGCCACATCAGTTACAAGGACTCACTCTGTCTGCAAGGACAGTGTTCAACATGACTGCTGAATGACTGACTACCTCATCACTccaaccccacacatacagataattgtaaggtccttCAAATCGAGCtgtgaatttcaaccacaaaagaccagagaggttttacAATAACCTCGCAAAAAGAAGGGCACCTCATTTTGGTAGATGAATAAAACGCtgaaagcagacattgaatatcaacACACCAAGTCACTACAAAAGATTCAGGCGTCCGTCCTAACCGAGTTGCCAGAGAGGATGGAAACCGCTCGGGGATTTCACCATTAGGCCAAAGGTCACGGAGGAGTTCTTGAGATTTTCTGATATACCAATGATCCTATGTGTTACCATGGCGATGTCGTCAAATCCACTGATACCGCGCGTTACTACGGCGATGTCGTCAAATCCACTGATACCGCGCGTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1055945 False 1050 lncRNA 0.40 2 79784422 79785699
TU1055946 True 540 lncRNA 0.44 2 79784893 79785699

Neighbor

gene id symbol gene type direction distance location
LOC110532970 LOC105020822 coding upstream 2365 79727045 ~ 79782057 (+)
LOC110516173 LOC106596573 coding upstream 81306 79584074 ~ 79703116 (+)
LOC118936796 NA coding upstream 83740 79698078 ~ 79700682 (+)
LOC110514189 LOC106593948 coding upstream 182736 79597075 ~ 79601686 (+)
LOC118966659 NA coding upstream 202806 79580106 ~ 79581616 (+)
LOC118936797 LOC106610424 coding downstream 97216 79882915 ~ 79895771 (+)
LOC118936798 LOC106610412 coding downstream 231258 80016957 ~ 80021704 (+)
LOC110516353 LOC106610561 coding downstream 568238 80353937 ~ 80358078 (+)
LOC110497187 LOC106610426 coding downstream 575328 80361027 ~ 80365186 (+)
LOC110516989 LOC103383728 coding downstream 841047 80626746 ~ 80651979 (+)
G927829 NA non-coding upstream 28083 79755433 ~ 79756339 (+)
G927825 NA non-coding upstream 36871 79747237 ~ 79747551 (+)
G927812 NA non-coding upstream 59977 79724230 ~ 79724445 (+)
G927809 NA non-coding upstream 63557 79720259 ~ 79720865 (+)
G927808 NA non-coding upstream 67330 79716762 ~ 79717092 (+)
G927842 NA non-coding downstream 23515 79809214 ~ 79809431 (+)
G927849 NA non-coding downstream 40083 79825782 ~ 79826393 (+)
G927851 NA non-coding downstream 44700 79830399 ~ 79830749 (+)
G927857 NA non-coding downstream 72175 79857874 ~ 79912192 (+)
G927606 NA other upstream 500278 79281386 ~ 79284144 (+)
G927584 NA other upstream 581441 79200281 ~ 79202981 (+)
LOC110515636 LOC105020871 other upstream 718875 79023569 ~ 79065796 (+)
G928206 NA other downstream 241303 80027002 ~ 80028219 (+)
G928335 NA other downstream 526245 80311944 ~ 80316569 (+)
LOC110515606 LOC106597156 other downstream 1035965 80723535 ~ 80922638 (+)
G928731 NA other downstream 1333866 81119565 ~ 81120877 (+)
G928705 LOC106594836 other downstream 1399186 81067884 ~ 81313748 (+)

Expression


Co-expression Network