XLOC_002822 (rps6kb1a)


Basic Information

Item Value
gene id XLOC_002822
gene name rps6kb1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28172344 ~ 28193642 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005236
GGAGTAAAAAGCAACACATTCGtgtgtttgtttgattaaaatgGTCAATCTGTTTGTTGACTTTTGTTTTACATATTTCTGAGCATGCGCACTGACGCCCTGTGACATTCTGATTTACTTTTACCGGTAGTTGATCTCCGTTGGGGAACGTTGCGTACCGGAGCCGGTTATGGCGTCGGTGAGTCGTGCTGGATCATGAGGCGTCGGGATTCGTCTTAATTCGGGTATTGGAGAGTCTAAGGAGACTGTGGCCATGGCTGGGGTGTTTGATATCGATTTGGACCCGCCGGAGGACAACGTGTCAGATGAGGAGCTCTCCGACGGGGCCAAGATTAATGAATATATAGACCAGTGCAGCGGTTTTGAGTTTATGGAAGATTGTGAAAAGTTTGAGATCTCTGAAGACAGCGTAAATCAAGGAACTGAGAAGATTCGTCCAGAGTGTTTTGAGTTGCTTCGTGTTTTGGGTAAAGGTGGATATGGAAAGGTTTTCCAAGTTCGCAAGGTTGCCGGGGCAGCTTCTGGGAAGATATTTGCCATGAAGGTCTTGAAGAAGGCCATGATTGTACGCAATGCAAAAGACACTGCTCACACTAAAGCAGAAAGGAGCATCCTGGAGGAAGTTAAGCATCCCTTCATTGTGGACCTTATATATGCCTTTCAGACAGGAGAAAAACTTTATCTCATCCTGGAGTACCTCAGTGGTGGAGAGCTGTTCATGCAGCTGGAGAGAGAGGGAATCTTCTTGGAGGACACGGCCTGCTTTTACCTGGCAGAGATTTCCCTGGCCTTAGGTCACCTTCATCAGAAGGGCATCATCTACAGGGATCTTAAACCAGAGAACATCATGCTAAATTACAACGGTCATGTCAAGCTGACAGACTTCGGACTTTGTAAGGAGTCGATCCACGATGGTACCGTCACACACACCTTCTGTGGAACCATAGAGTACATGGCACCAGAAATCCTCACCAGAAGTGGCCATAACCGAGCTGTGGACTGGTGGAGCCTGGGAGCTCTGATGTATGACATGCTAACAGGAGCTCCGCCGTTCACAGCGGAGAATCGGAAAAAGACCATTGACAAAATCCTGAAGTGCAAACTAAACCTTCCACCGTACCTCACCCAAGAGGCTCGAGACCTCCTCAAAAAGTTGCTGAAGAGAAATGCATCGGTACGGATTGGAGCAAGTCCTAGAGATGTTCTAGACATCCAGCGCCACTCTTTCTTCAGACACATAAACTGGGATGATCTGCTGGCATTCAAAATTGATCCTCCATTCAAACCCTTTTTGCAATCCGCAGATGATGTTAGCCAGTTTGACTCAAAGTTCACTAGTCAGACTCCCGTGGACAGCCCTGATGACACGAAGCTCAGTGAAAGCGACAACCAAGTCTTCCTGGGCTTTACATACATAGCTCCATCTGTGCTGGAAAACATCAAAGAAAAGTTCACTTTTGAGCCAAAATCCCGGTCACCTCGCAAGGTTCTGGGAAGCCCAAGAACACCAGTGAGCCCGTTGAAGGCTGAAGTTGAAGACGGTTGGTCTCGAGGTCCACTTTTCCCAGAAGTGACCACCTCCTCCTCTCTCCTGCCGCCCACTGGTGCACTAAAGCAGGCGTCTAATGTGGAGCAGATGGACATGAGCAGCAACATGGAGGCCTCGGCCCCGCTCCCTATCAAAAAACCACTGGGTTCCAACACAGGATCCTTCATGAAACAACCTCATCCAGTGGGCGGCAGAAGACCCAAGCATTTGAAGATGAAGCTTTGATGAACGACTTTTGAGTTTTGCACTTTAGGAATTAGTTTGATTGCCCAGAATGCCTTTCTGCACCCTGTTTCAATCTCGTAAATACTTG

Function

symbol description
rps6kb1a Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in TOR signaling and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation and signal transduction. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS6KB1 (ribosomal protein S6 kinase B1).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-52 Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in TOR signaling and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation and signal transduction. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS6KB1 (ribosomal protein S6 kinase B1).

Ensembl:

ensembl_id ENSDARG00000018399

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005236 True 1862 mRNA 0.48 15 28172344 28193642

Neighbor

gene id symbol gene type direction distance location
XLOC_002821 med13a coding downstream 54309 28029578 ~ 28118035 (-)
XLOC_002820 ints2 coding downstream 143345 27977373 ~ 28028999 (-)
XLOC_002818 auts2a coding downstream 430535 27182704 ~ 27741809 (-)
XLOC_002819 AL844197.1 coding downstream 757982 27414246 ~ 27414362 (-)
XLOC_002817 BX248510.3 coding downstream 1002272 27169956 ~ 27170072 (-)
XLOC_002823 NA coding upstream 4274 28197916 ~ 28291989 (-)
XLOC_002824 NA coding upstream 53193 28246835 ~ 28248743 (-)
XLOC_002825 CR392341.5 coding upstream 99201 28292843 ~ 28292959 (-)
XLOC_002826 cltca coding upstream 117389 28311031 ~ 28368913 (-)
XLOC_002827 btg3 coding upstream 177174 28370816 ~ 28380928 (-)
XLOC_002816 NA non-coding downstream 1010199 27157937 ~ 27162145 (-)
XLOC_002813 NA non-coding downstream 1169730 27000562 ~ 27002614 (-)
XLOC_002809 NA non-coding downstream 1270039 26901272 ~ 26902305 (-)
XLOC_002828 NA non-coding upstream 188443 28382085 ~ 28385569 (-)
XLOC_002830 NA non-coding upstream 224009 28417651 ~ 28418179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_13342458_13361412 RPS6KB1A coding CI01000304 null 13342420 ~ 13361412 (-)