G928427 (LOC106602129)


Basic Information

Item Value
gene id G928427
gene name LOC106602129
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80492556 ~ 80494547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1056819
CAAGCTGCTTGTGTTTAGAATTTGCCCCCAATCCTTTAAAATGACAAATGTGTGTGCGTGctagggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctagggtttgtgtgtgtgtgtgtcccaaccTGTCAGATCCACAAGTCCACTTGTTGTAACAGAAAGACATTGAAACAGAAGCATTGTTAGAACCCTGAGGAAGATAGAACTCAGAGGAGGAATGTTGTGATTAGAATGTCTTTAGACAGGGCCTGTCTAAAATCAaacataatagaacacTGAGGAAGACAGAATGTCTTAATGAAACATAGTAGAACACCCATTATGTTAATGGGGGCCCAGAATCATTCCTGTTCAGGACACAACACATGATCAGATTCCTGCCCATAGTGGAGGTAGGTGTTCCCCTGGTGGACAGGGTACCTGGCCAGGAAGACTAAACAGAACATAAGGCCTTCTGGGAACATGGGGGGAACGTTGGTGGTACTCCGGCCAGAGCTAAATGTGATGGGGGACAGAAACCAAAAAAAGATTGAGAACCAATCTTGTAGGAGACATTTCACATAGCACccattccctttacagtgcactacttttgactatatagggaacagggtgcactatatagggaatagggtgtactatatagggaatatggtgccatttgggatgcaaactacaaataatttttattttacctaactaggcaagtcagtttaagaacaaatccttattttcaatgacggcctaggaacagtaggttgttcaggggcagaatgacagatctgTACCTTATCAGctaggggatttgaacttgcaacctttcggctactagtccaacgctctaaccactagcctaccctgccgccccacaatgCACTTGGGctttggtcaaatgtagtgcaccaAataagggaatagtgtgccgttttCAGTCTTTCTCCTGTCCAGTCTTCTAGAAGTTCCGTAGCAGCCAGGTGGGAGCAGAGACTCCTGCCTGAGTAAAGTAGTTCCACCACCACGGCTTCTCCTGTCCCTCTGCTCCCATCCCCGGTTCCCTGGGTTCCCTGGGTTCCCTGGGTTCTCCCGGCTCGGAGCGGCCGTAGCTCTGGAAGTGGTTGTAAGGGTCGAAGCGCTCATAAGTGTCCAAGGAGGAGCTGAGGAACAGGTGGTAGTCTGGTCCTACTG

Function

NR:

description
carboxypeptidase Z-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1056819 True 1189 lncRNA 0.47 4 80492556 80494547

Neighbor

gene id symbol gene type direction distance location
LOC110497187 LOC106610426 coding upstream 127370 80361027 ~ 80365186 (+)
LOC110516353 LOC106610561 coding upstream 134478 80353937 ~ 80358078 (+)
LOC118936798 LOC106610412 coding upstream 470852 80016957 ~ 80021704 (+)
LOC118936797 LOC106610424 coding upstream 596785 79882915 ~ 79895771 (+)
LOC110532970 LOC105020822 coding upstream 710499 79727045 ~ 79782057 (+)
LOC110516989 LOC103383728 coding downstream 132199 80626746 ~ 80651979 (+)
LOC118936381 LOC105020813 coding downstream 196471 80691018 ~ 80713764 (+)
LOC110515606 LOC106597156 coding downstream 228988 80723535 ~ 80922638 (+)
trnae-cuc-165 NA coding downstream 435549 80930096 ~ 80930167 (+)
LOC118936804 NA coding downstream 440666 80935213 ~ 80936319 (+)
G928424 NA non-coding upstream 4015 80488082 ~ 80488541 (+)
G928418 NA non-coding upstream 13888 80478396 ~ 80478668 (+)
G928415 NA non-coding upstream 16563 80475791 ~ 80475993 (+)
G928403 NA non-coding upstream 28804 80444801 ~ 80463752 (+)
G928402 NA non-coding upstream 32831 80440543 ~ 80459725 (+)
G928438 NA non-coding downstream 26820 80521367 ~ 80522903 (+)
G928452 NA non-coding downstream 49019 80543566 ~ 80546602 (+)
G928455 NA non-coding downstream 73445 80567992 ~ 80568369 (+)
G928456 NA non-coding downstream 74118 80568665 ~ 80581182 (+)
G928461 NA non-coding downstream 87357 80581904 ~ 80582174 (+)
G928335 NA other upstream 175987 80311944 ~ 80316569 (+)
G928206 NA other upstream 464337 80027002 ~ 80028219 (+)
LOC110514189 LOC106593948 other upstream 891784 79597075 ~ 79601686 (+)
G927606 NA other upstream 1208412 79281386 ~ 79284144 (+)
G928731 NA other downstream 625018 81119565 ~ 81120877 (+)
G928705 LOC106594836 other downstream 690338 81067884 ~ 81313748 (+)
LOC118936811 LOC106593215 other downstream 744550 81239097 ~ 81247351 (+)
G928757 NA other downstream 782492 81277039 ~ 81330349 (+)

Expression


Co-expression Network