G928589


Basic Information

Item Value
gene id G928589
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80712869 ~ 80715551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057096
AACGATCCATACAGCAGAGAGTTGAATATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCATACAGCAGAGAGTCGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAATGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAATGACTCAGACAGTCTAAAATagcatcatcctcatcatcatgtCCAATATAACATGTGATTCCTCTACTAAATTAGCTGTTCACCCTGAAGTGGgttgtttttttaaacagatGCGCACATCTTTGTTCTCTACTTGACTTTTATCAAGTCATCAGTTCCTTTAGTTTTGATCACACAGTTATACCAGTTGTTTATTTCATACATGTACATATCAAGTGGTTTCAAGGCGTGGGAGTGATGATATTGCTTTGCTTTGATGGTGAATTGACAGTGTGCAGTGCTGTTCTGATGGGGAGGGAACAGTCTTGCACACAGTATGTAGTAACAGTATGTAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGCACACAGTATGCAGTAAAAGTATGAAGTAACAGTATGCACACAGTATGTAGTAACAGTATGCACACAGTATGTAGTAACAGTATGCAGTAACAGTATGAAGTAACAGTATGCACACAGTATGCAGTAACAGTATGAAGTAACAGTATGCACACAGTATGTAGTAACAGTATGCACACAGTATGTAGTAACAGTATGCAGTAACAGTATGCACACAGTATGCAGTAACAGTATGCACACAGTATGCAGTAAAAGTATGAAGTAACAGTATGCACACAGTATGTAGTAACAGTATGCACACAGTATGTAGTAACAGTATGCAGTAACAGTATGAAGTAACAGTATGCACACAGTATGCAGTAACAGTATGAAGTAACAGTATGCACACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGTAGTAACAGTATGTACACAGTATGCAGTAACAGTATGCACACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGTAGTAACAGTATGTACACAGTATGCAGTAACAGTCTGCACACAGGGAATGATTGTGTTTGAAAGAAAACGTTCACCATGAATATAATAAGCTATACATATCGTTGTGCTGTCAAATACCACGTGAAAGAAATGTGTATCACAGGAGTGGAATCAAACGTCTAAAAACAAGCGATAAGTTACCAGCCCACACGAGACACACTGGTCCACATGAGACACACTGGTCCACACGAGACACACTGGTCCACACGAGACACACTGGGAAATACATACTGATACCAAAGATACCTAAACCAGCTGCAGGACATACTGCAACATACTGCGGTTCCTCAACTGACCAATAGAGGGAGTAAGAGGAGCAACGTGTCTGAGCTgacacactgtgtgtgtttccattGTAATAAACCGGCTGTATGTCTTACAGTAATGCCCCCTATATGGGCCCAAAGATGAAgaaccctatgggctctggtctatagtagtgcactatatagggaatagggctctggtctaaaatagtgcactatatagggaatagggctctggtctaaaatagtgcactacatagggaatagggtgcaatttgtgaCGCAGACATAGATGAGCCTCGAGTCTAGAATATTGTGAGGCCAAACACACAAAACAAGGTGATGTTCCCAGCTGCTCATCCCAGGTTGGTGATGTTGGATCGGCCACCAGGTGGCGCTACGATGCGTTGGCCAGAGCGCCGAGGAATGTTGTCATCAAACTGAGCccctgagacagagagacggagaaagagagtgagaggcagagaaagagagagagagaaag
>TU1057094
ATCTACCTCTGGAGTGAACGATCCATACAGCAGAGAGTCGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAATGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAATGACTCAGACAGTCTAAAATagcatcatcctcatcatcatgtCCAATATAACATGTGATTCCTCTACTAAATTAGCTGTTCACCCTGAAGTGGgttgtttttttaaacagatGCGCACATCTTTGTTCTCTACTTGACTTTTATCAAGTCATCAGTTCCTTTAGTTTTGATCACACAGTTATACCAGTTGTTTATTTCATACATGTACATATCAAGTGGTTTCAAGGCGTGGGAGTGATGATATTGCTTTGCTTTGATGGTGAATTGACAGTGTGCAGTGCTGTTCTGATGGGGAGGGAACAGTCTTGCACACAGTATGTAGTAACAGTATGTAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGTAGTAACAGTATGTACACAGTATGCAGTAACAGTCTGCACACAGGGAATGATTGTGTTTGAAAGAAAACGTTCACCATGAATATAATAAGCTATACATATCGTTGTGCTGTCAAATACCACGTGAAAGAAATGTGTATCACAGGAGTGGAATCAAACGTCTAAAAACAAGCGATAAGTTACCAGCCCACACGAGACACACTGGTCCACACGAGACACACTGGGACACACGAGACACACTGGTCCACACGAGACACACTGGGACACACTGGTCCACATGAGACACACTGGTCCACACGAGACACACTGGTCCACACGAGACACACTGGGAAATACATACTGATACCAAAGATACCTAAACCAGCTGCA
>TU1057097
ATCTACCTCTGGAGTGAACGATCCATACAGCAGAGAGTCGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAATGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAACGATCCGTACAGCAGAGAGTTGAACATCTCATCACAACAAAGATCTACCTCTGGAGTGAATGACTCAGACAGTCTAAAATagcatcatcctcatcatcatgtCCAATATAACATGTGATTCCTCTACTAAATTAGCTGTTCACCCTGAAGTGGgttgtttttttaaacagatGCGCACATCTTTGTTCTCTACTTGACTTTTATCAAGTCATCAGTTCCTTTAGTTTTGATCACACAGTTATACCAGTTGTTTATTTCATACATGTACATATCAAGTGGTTTCAAGGCGTGGGAGTGATGATATTGCTTTGCTTTGATGGTGAATTGACAGTGTGCAGTGCTGTTCTGATGGGGAGGGAACAGTCTTGCACACAGTATGTAGTAACAGTATGTAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGtagtaacagtatgaAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTCTGCAGTAACAGTATGCAGTAACAGTCTGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTCTGCAGTAACAGTCTGCAGTAACAGTCTGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGTAGTAACAGTATGTACACAGTATGCAGTAACAGTATGCACACAGTATGCAGTAACAGTATGCAGTAACAGTATGCAGTAACAGTATGTAGTAACAGTATGTACACAGTATGCAGTAACAGTCTGCACACAGGGAATGATTGTGTTTGAAAGAAAACGTTCACCATGAATATAATAAGCTATACATATCGTTGTGCTGTCAAATACCACGTGAAAGAAATGTGTATCACAGGAGTGGAATCAAACGTCTAAAAACAAGCGATAAGTTACCAGCCCACACGAGACACACTGGTCCACACGAGACACACTGGGACACACGAGACACACTGGTCCACACGAGACACACTGGGACACACTGGTCCACATGAGACACACTGGTCCACACGAGACACACTGGTCCACACGAGACACACTGGGAAATACATACTGATACCAAAGATACCTAAACCAGCTGCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106566327

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057096 False 2122 lncRNA 0.42 3 80712869 80715551
TU1057094 False 1147 lncRNA 0.42 3 80713380 80715447
TU1057097 True 1338 lncRNA 0.42 2 80713380 80715447

Neighbor

gene id symbol gene type direction distance location
LOC110516987 LOC106597865 coding downstream 25308 80652992 ~ 80687561 (-)
LOC118936803 NA coding downstream 37019 80674420 ~ 80675884 (-)
LOC110517091 pi4k2b coding downstream 102040 80580548 ~ 80610829 (-)
LOC118936802 LOC106602096 coding downstream 137486 80546814 ~ 80575383 (-)
LOC110511271 LOC106602098 coding downstream 180717 80494096 ~ 80532152 (-)
trnae-cuc-166 NA coding upstream 214761 80930312 ~ 80930383 (-)
LOC118936805 LOC106591917 coding upstream 301813 81017364 ~ 81027020 (-)
LOC118966660 LOC106592710 coding upstream 311542 81027093 ~ 81047680 (-)
LOC118966661 NA coding upstream 345416 81060967 ~ 81061753 (-)
LOC118936806 NA coding upstream 357512 81073063 ~ 81074909 (-)
G928565 NA non-coding downstream 45986 80666422 ~ 80666883 (-)
G928559 NA non-coding downstream 60328 80652296 ~ 80652541 (-)
G928558 LOC106590778 non-coding downstream 60667 80648376 ~ 80652202 (-)
G928548 NA non-coding downstream 81615 80630681 ~ 80631254 (-)
G928588 NA non-coding upstream 123 80715674 ~ 80717654 (-)
G928591 NA non-coding upstream 3740 80719291 ~ 80719821 (-)
G928592 NA non-coding upstream 4447 80719998 ~ 80720272 (-)
G928594 NA non-coding upstream 4762 80720313 ~ 80721065 (-)
G929490 NA non-coding upstream 33965 80749516 ~ 80750307 (-)
G927980 LOC106591517 other downstream 1125004 79586078 ~ 79587865 (-)
G927948 LOC106602109 other downstream 1154914 79554714 ~ 79559828 (-)
G929479 NA other upstream 7944 80723495 ~ 80724244 (-)
G929489 NA other upstream 31919 80747470 ~ 80747858 (-)
G929509 NA other upstream 103298 80818849 ~ 80819541 (-)
LOC118936810 LOC106596791 other upstream 570428 81285870 ~ 81294695 (-)
LOC110510685 LOC106590958 other upstream 597383 81312816 ~ 81329120 (-)

Expression


Co-expression Network