G928588


Basic Information

Item Value
gene id G928588
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80715674 ~ 80717654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057090
gtgatttcagttttttatttcagTGAATATTGATAATGTGATTACATCAGCGACATCCGACAACAGAACAGAGACCGACTGGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTGGCTGGCCCTCAGATTCTAGGATTCAACCCTTAAAGATACAGACTGCTCTGTAGTGGGCCCTCAGATTCTAGGATTCAGCCCTTACAGATACAGACTGCTCTGTAGCATGCCCTCAGATTAAAGGATTCAACCCTTACAGACACAGACTGCTCTGTAGAGGGCCCTCAGATTCTAGGATTCAATCCTTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGATTCTAGGATTTAACCCTTACAGACACAGACTGCTCTGTAGAGGGCCCTCAGATTCTAGGATTCAATCCTTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGATTCTAGGATTTAACCCTTACAGATATAGACTGCTCTGTAGCGTGCCCTCAGATTAAAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGTCTCTCAGATTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGAATATAGGATTCAACCCTTACAGATACAGACTGCTCTGCACCGATCTCTCAGATTCTAGGATTCAACTCTTACAGATACAGACTGCTCTGTAGCGTTCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGTTCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGTTCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGATTCTAGGATTCAACTCTTACAGATACAGACTGCTCTGCACCGATCTCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGAATATAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGTCTCTCAGATTACAGATACAGACTGCTCTGTAGCGGTCTCTCAGATTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGTGTCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGCCTGAGTCAcagtctgtttgtgctttttTTAACGTTTAGCTTGACAATGACAACAATGACTGTTGTCAACAGCACAAACCAGGCGACTCAGCGTGTGGTTCAGAGTGGTGTTAAAACACGACATGTAACATAACACAGTAAAACAACCAGTAACATCCACATCAAGTAAATAGAAGGTGAAGCGGTCGTTCGTGACAGGAGCCTTATTAAACACCAGTAGGAGCTGAGGCGCTTTACAGCAGAGAGTTGAACATCTCTTCACAACAAAGATCTACCTCTGGAG
>TU1057091
gtgatttcagttttttatttcagTGAATATTGATAATGTGATTACATCAGCGACATCCGACAACAGAACAGAGACCGACTGGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTGGCTGGCCCTCAGATTCTAGGATTCAACCCTTAAAGATACAGACTGCTCTGTAGTGGGCCCTCAGATTCTAGGATTCAGCCCTTACAGATACAGACTGCTCTGTAGCATGCCCTCAGATTAAAGGATTCAACCCTTACAGACACAGACTGCTCTGTAGAGGGCCCTCAGATTCTAGGATTCAATCCTTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGATTCTAGGATTTAACCCTTACAGACACAGACTGCTCTGTAGAGGGCCCTCAGATTCTAGGATTCAATCCTTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGATTCTAGGATTTAACCCTTACAGATATAGACTGCTCTGTAGCGTGCCCTCAGATTAAAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGTCTCTCAGATTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGAATATAGGATTCAACCCTTACAGATACAGACTGCTCTGCACCGATCTCTCAGATTCTAGGATTCAACTCTTACAGATACAGACTGCTCTGTAGCGTTCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGTTCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGTTCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGATTCTAGGATTCAACTCTTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGCCTGAGTCAcagtctgtttgtgctttttTTAACGTTTAGCTTGACAATGACAACAATGACTGTTGTCAACAGCACAAACCAGGCGACTCAGCGTGTGGTTCAGAGTGGTGTTAAAACACGACATGTAACATAACACAGTAAAACAACCAGTAACATCCACATCAAGTAAATAGAAGGTGAAGCGGTCGTTCGTGACAGGAGCCTTATTAAACACCAGTAGGAGCTGAGGCGCTTTACAGCAGAGAGTTGAACATCTCTTCACAACAAAGATCTACCTCTGGAG
>TU1057092
gtgatttcagttttttatttcagTGAATATTGATAATGTGATTACATCAGCGACATCCGACAACAGAACAGAGACCGACTGGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTGGCTGGCCCTCAGATTCTAGGATTCAACCCTTAAAGATACAGACTGCTCTGTAGTGGGCCCTCAGATTCTAGGATTCAGCCCTTACAGATACAGACTGCTCTGTAGCATGCCCTCAGATTAAAGGATTCAACCCTTACAGACACAGACTGCTCTGTAGAGGGCCCTCAGATTCTAGGATTCAATCCTTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGATTCTAGGATTTAACCCTTACAGACACAGACTGCTCTGTAGAGGGCCCTCAGATTCTAGGATTCAATCCTTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGATTCTAGGATTTAACCCTTACAGATATAGACTGCTCTGTAGCGTGCCCTCAGATTAAAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGTCTCTCAGATTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGAATATAGGATTCAACCCTTACAGATACAGACTGCTCTGCACCGATCTCTCAGATTCTAGGATTCAACTCTTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGTGTCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGGGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGTAGCGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGGATTCAACCCTTACAGATACAGACTGCTCTGCAACGTGCCCTCAGATTCTAGCCTGAGTCAcagtctgtttgtgctttttTTAACGTTTAGCTTGACAATGACAACAATGACTGTTGTCAACAGCACAAACCAGGCGACTCAGCGTGTGGTTCAGAGTGGTGTTAAAACACGACATGTAACATAACACAGTAAAACAACCAGTAACATCCACATCAAGTAAATAGAAGGTGAAGCGGTCGTTCGTGACAGGAGCCTTATTAAACACCAGTAGGAGCTGAGGCGCTTTACAGCAGAGAGTTGAACATCTCTTCACAACAAAGATCTACCTCTGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057090 False 1929 lncRNA 0.46 2 80715674 80717654
TU1057091 False 1649 lncRNA 0.46 3 80715674 80717654
TU1057092 True 1545 lncRNA 0.46 3 80715674 80717654

Neighbor

gene id symbol gene type direction distance location
LOC110516987 LOC106597865 coding downstream 28113 80652992 ~ 80687561 (-)
LOC118936803 NA coding downstream 39824 80674420 ~ 80675884 (-)
LOC110517091 pi4k2b coding downstream 104845 80580548 ~ 80610829 (-)
LOC118936802 LOC106602096 coding downstream 140291 80546814 ~ 80575383 (-)
LOC110511271 LOC106602098 coding downstream 183522 80494096 ~ 80532152 (-)
trnae-cuc-166 NA coding upstream 212658 80930312 ~ 80930383 (-)
LOC118936805 LOC106591917 coding upstream 299710 81017364 ~ 81027020 (-)
LOC118966660 LOC106592710 coding upstream 309439 81027093 ~ 81047680 (-)
LOC118966661 NA coding upstream 343313 81060967 ~ 81061753 (-)
LOC118936806 NA coding upstream 355409 81073063 ~ 81074909 (-)
G928589 NA non-coding downstream 123 80712869 ~ 80715551 (-)
G928565 NA non-coding downstream 48791 80666422 ~ 80666883 (-)
G928559 NA non-coding downstream 63133 80652296 ~ 80652541 (-)
G928558 LOC106590778 non-coding downstream 63472 80648376 ~ 80652202 (-)
G928591 NA non-coding upstream 1637 80719291 ~ 80719821 (-)
G928592 NA non-coding upstream 2344 80719998 ~ 80720272 (-)
G928594 NA non-coding upstream 2659 80720313 ~ 80721065 (-)
G929490 NA non-coding upstream 31862 80749516 ~ 80750307 (-)
G929499 NA non-coding upstream 77330 80794984 ~ 80795674 (-)
G927980 LOC106591517 other downstream 1127809 79586078 ~ 79587865 (-)
G927948 LOC106602109 other downstream 1157719 79554714 ~ 79559828 (-)
G929479 NA other upstream 5841 80723495 ~ 80724244 (-)
G929489 NA other upstream 29816 80747470 ~ 80747858 (-)
G929509 NA other upstream 101195 80818849 ~ 80819541 (-)
LOC118936810 LOC106596791 other upstream 568325 81285870 ~ 81294695 (-)
LOC110510685 LOC106590958 other upstream 595280 81312816 ~ 81329120 (-)

Expression


Co-expression Network