G928594


Basic Information

Item Value
gene id G928594
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 80720313 ~ 80721065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057103
tgcaggggtaccaggtaataacttggctatatacacagggtaccagtactgagtcaatgtgcaggggtactaggtaataacatggctatatacacggggtaccagtactgagtggatgtgcaggggtactaggtaataacatggctatatacacagggtaccagtactgagtcaatgtccaggggtactaggtaataacatggctatatacacggggtaccagtactgagtcgatgtgcaggggtaccaggtaataacatggctatatacacagggtaccagtactgagtggatgtgcaggggtaccaggtaataacatggctatatacacagggtaccagtactgagtcgatgtgcaggggtacgaggtaataacatggctatatacacagggtaccag
>TU1057105
tgcaggggtaccaggtaataacttggctatatacacagggtaccagtactgagtcaatgtgcaggggtactaggtaataacatggctatatacacggggtaccagtactgagtggatgtgcaggggtactaggtaataacatggctatatacacagggtaccagtactgagtcaatgtccaggggtactaggtaataacatggctatatacacggggtaccagtactgagtcgatgtgcaggggtaccaggtaataacttggctatatacacagggtaccagtactgagtcatatacaggggtactaggtaataacatggctatatacacagggtaccagtactgagtcgatgtgcaggggtactaggtaataacatggctatatacacagggtaccagtactgagtcgatgtgcaggggtacgaggtaataacatggctatatacacagggtaccag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057103 False 400 lncRNA 0.47 3 80720313 80721065
TU1057105 True 458 lncRNA 0.46 2 80720313 80721065

Neighbor

gene id symbol gene type direction distance location
LOC110516987 LOC106597865 coding downstream 32752 80652992 ~ 80687561 (-)
LOC118936803 NA coding downstream 44463 80674420 ~ 80675884 (-)
LOC110517091 pi4k2b coding downstream 109484 80580548 ~ 80610829 (-)
LOC118936802 LOC106602096 coding downstream 144930 80546814 ~ 80575383 (-)
LOC110511271 LOC106602098 coding downstream 188161 80494096 ~ 80532152 (-)
trnae-cuc-166 NA coding upstream 209247 80930312 ~ 80930383 (-)
LOC118936805 LOC106591917 coding upstream 296299 81017364 ~ 81027020 (-)
LOC118966660 LOC106592710 coding upstream 306028 81027093 ~ 81047680 (-)
LOC118966661 NA coding upstream 339902 81060967 ~ 81061753 (-)
LOC118936806 NA coding upstream 351998 81073063 ~ 81074909 (-)
G928592 NA non-coding downstream 41 80719998 ~ 80720272 (-)
G928591 NA non-coding downstream 492 80719291 ~ 80719821 (-)
G928588 NA non-coding downstream 2659 80715674 ~ 80717654 (-)
G928589 NA non-coding downstream 4762 80712869 ~ 80715551 (-)
G929490 NA non-coding upstream 28451 80749516 ~ 80750307 (-)
G929499 NA non-coding upstream 73919 80794984 ~ 80795674 (-)
G929507 NA non-coding upstream 96458 80817523 ~ 80817791 (-)
G929510 NA non-coding upstream 98651 80819716 ~ 80819929 (-)
G929512 NA non-coding upstream 100939 80822004 ~ 80822629 (-)
G928558 LOC106590778 other downstream 68111 80648376 ~ 80652202 (-)
G927980 LOC106591517 other downstream 1132448 79586078 ~ 79587865 (-)
G927948 LOC106602109 other downstream 1162358 79554714 ~ 79559828 (-)
G929479 NA other upstream 2430 80723495 ~ 80724244 (-)
G929489 NA other upstream 26405 80747470 ~ 80747858 (-)
G929509 NA other upstream 97784 80818849 ~ 80819541 (-)
LOC118936810 LOC106596791 other upstream 564914 81285870 ~ 81294695 (-)
LOC110510685 LOC106590958 other upstream 591869 81312816 ~ 81329120 (-)

Expression


Co-expression Network