G928705 (LOC106594836)


Basic Information

Item Value
gene id G928705
gene name LOC106594836
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81067884 ~ 81313748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057261
tactcattaagtatgtagtatacagtatactaaaattaactaatagtatgtagtatatactcattaagtatgtagtatacagtatactaaaatgaactaatattatgtagtattttctcattaagtatgtagtatacagtatgttagtatgggtattcgaaaaCAGCTCTAGACTCCCCTCTCCCACTCATCTCTGCACACTAGACTGTCACGTCTAAACCAGAGACAATCACACAAACTTTGTAGTCTATGATCATACCCTCAAATGGCACCCTCCTCCTTATATAATGTACTACTTCCCTcacagctctggtctaaagtagtgcacttcatagggaagagggtgccagttGAGATTAGAGCCTATTTGTATGGACCCGTATGCTACAGCTGGACATGGGCCAGTTTCCTGTATCCATGGCTCTGGGTTGTAGTGTCAGCCTAGTGACCGTTGCTTAGCGATAGATGAAGGACTGATCAGCTAAGCAGAACGACCGGAACAGTTTGTTTTTTTTCACCCTGTTGTTATGGTTACCTGttctggtttttgtttggcaCATTATTTACCTGTTCAGGGACACGGGGCAGTAGATGTTTTtgcgttactgtgtgtgtgtgtgtgtgtgtgtgtctcattcttaatgtgtgtgtattagatGAATGTTTACAGGCTTCCCAGCCAACCAATGGTGAACAGACAGAAGTGTGGTGGAATACTCACCAAGTTAAAGAATGAGtcctaaatggtaccctattccctatgtagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagggccctattccctatatagtggtactactttagaccagggccctattccctatatagtggtactgctttagaccagggccctattccctatgtagtgcactagtatcgaccagggccctattccctatgtagctcactactttagaccagagccctattccctatatagtgcactactttagaccagggccatattccctatatagtgcactactttagaccagagtcctattccctatgtagtgcactactttagaccagggcactattccctatatagagccctatgggtcctggtctaaagtagtgcactacatagggaatagggccctggtcgatactagtgcactacatagagaatagagcACTATGGAAC
>TU1057264
ccattctaccattaggttggtaccccaccactgttactatccattctaccattaggttggtaccccaccactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtacccaaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgctactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactgtccccattctaccattaggttgataccccaacactgttactatccattctaccattaggttgataccccaacactgttactatccattctaccattaggttgataccccaacactgttactatccattctaccattaggt
>TU1057265
ccattctaccattaggttggtaccccaccactgttactatccattctaccattaggttggtaccccaccactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactgtccccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccatgcaaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattgggttggtaccccaacactgaTACTGTCCCCATTCTACCATTAtgttggtaccccaacactgttgaTCTGAAGCTGTGAACAAAGATAGGCGTCCAGTTCCCCAAATAAGTTGATCATCCTGTAACTTGACTCAGTTCCTTTTCTCAACACCATGTCGATGATGTCACGTGCCTTCTCTGCCCTCTCAGCTATCACCTTCACTGACTCCATTTCCTCCTGGTTGATGACTGTGTGTTGCAGGAGTCTGTCCAGCAGACCATCCAGGACAGGTCCTGATACTCGTTTCACAAACTCTGTCCGTACAGAACGCAGCTGCTGCTCTGCAGAACCAGTCAGACTACTTTCAGCCGGACCTCCTGCCCCCAACACAGCACCTGAGAGAGTCAGGGACGGTTTCACAGACATAGAAAAACAGACTGGGGcattcagaaccaggctaatctacatcaactcctggaggagatgtcattggggcattcagaaccagg
>TU1057266
gttttctcattaagtatgtagtatacagtatgttagtatgggtattcgaaaaCAGCTCTAGACTCCCCTCTCCCACTCATCTCTGCACACTAGACTGTCACGTCTAAACCAGAGACAGTCACACAAACTTTGTAGTCTATGATCATACCCTCAAATGGCACCCTCCTCCTTATATAATGTACTACTTCCCTcacagctctggtctaaagtagtgcacttcatagggaacagggtgccagttGAGATTAGAGCCTATTTGTATGGACCCGTATGCTAAAGCTGGACATGGGCCAGTTTCCTGTATCCATGGCTCTGGGTTGTAGTGTCAGCCTAGTGACCGTTGCTTAGCGATAGACGGAGGACTGATCAGCGAAGCAGAACGACCGGAACAGTTTGTTTTTCTTCACCCTGTTGTTATGGTTACCTGttctggtttttgtttggcaCATTATTTACCTGTTCAGGGACACGGGGCAGTAGATGTTTTtgcgttactgtgtgtgtgtgtctcattcttaatgtgtgtgtattagatGAATGTTTACAGGCTTCCCAGCCAACCAATAATGAATAGACAGAAGTGTGGTGGAATACTCACCAAGTTAAAGAATGAGtcctaaatggtaccctattccctatgtagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagggccctattccccatatatagtggtactactttagaccagggccctattccctatatagtggtactactttagaccagggccctattccctatatagtggtactgctttagaccagggccctattccctatatagtgcactactttagaccagggccctattccctatgtagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagggccctattccctatatagagccctatgggccctggtctaaagtagtgcactacatagggaatagggccctggtcgatactagtgcactacatagagaatagagcACTATGGAACCATTTTAGGAACCAAAAACTATATTTAATTGGTCTAGGATCAGGATCAACACTGTTACTACCCATTCTACCATTAGGatggtaccccaacactgttaccatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggatggtaccccaacactgttactacccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttgatACCCCAACAGtgttactatccattctaccattaggttgataccccaacactgttactatccattctaccattaggttgataccccaacactgttactatccattctaccattaggttgataccccaacactgttactaccCATTCTACCAGTAGGTTgataccccaacactgttactatccattctaccattaggttgataccccaacactgttactgtccattctaccattaggttggcaccccaacactgttactatccattctaccattaggttgatACCCTAACACTGTTACTGtccattccaaatcaaatcaaatgtatttgtcacatacacatggttagcagatgttgttaatgcgagtgtagcgaaatgattgtgcttctagttccgacaatgcagtaataaccaacaagtaataacctaacctaacaattccacaactatttccttatacacacaagtgtaaagggataaagaatatgtacataaagatatatgaatgagtgatggttacagaacggcataggcaagatgcagtagatggtatcgagtacagtatatacatatgagatgagtaaagtggCATAGTTGGGgtaccattaggttggtaccccaacactgttactgtccattctaccattaggttgataccccaacactgttactgtccattaggttggtaccccaacactgttactgtccattctaccattaggttgataccccaacactgttactgtccattaggttggtaccccaacactgttactatccattaTACCATTAGGTTGATACCCCAGCATtgttactatccattctaccattaggttggtaccccaacactgttactatccatgcaaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattgggttggtaccccaacactgaTACTGTCCCCATTCTACCATTAtgttggtaccccaacactgttgaTCTGAAGCTGTGAACAAAGATAGGCGTCCAGTTCCCCAAATAAGTTGATCATCCTGTAACTTGACTCAGTTCCTTTTCTCAACACCATGTCGATGATGTCACGTGCCTTCTCTGCCCTCTCAGCTATCACCTTCACTGACTCCATTTCCTCCTGGTTGATGACTGTGTGTTGCAGGAGTCTGTCCAGCAGACCATCCAGGACAGGTCCTGATACTCGTTTCACAAACTCTGTCCGTACAGAACGCAGCTGCTGCTCTGCAGAACCAGTCAGACTACTTTCAGCCGGACCTCCTGCCCCCAACACAGCACCTGAGAGAGTCAGGGACGGTTTCACAGACATAGAAAAACAGACTGGGGcattcagaaccaggctaatctacatcaactcctggaggagatgtcattggggcattcagaaccagg
>TU1057267
gttttctcattaagtatgtagtatacagtatgttagtatgggtattcgaaaaCAGCTCTAGACTCCCCTCTCCCACTCATCTCTGCACACTAGACTGTCACGTCTAAACCAGAGACAGTCACACAAACTTTGTAGTCTATGATCATACCCTCAAATGGCACCCTCCTCCTTATATAATGTACTACTTCCCTcacagctctggtctaaagtagtgcacttcatagggaacagggtgccagttGAGATTAGAGCCTATTTGTATGGACCCGTATGCTAAAGCTGGACATGGGCCAGTTTCCTGTATCCATGGCTCTGGGTTGTAGTGTCAGCCTAGTGACCGTTGCTTAGCGATAGACGGAGGACTGATCAGCGAAGCAGAACGACCGGAACAGTTTGTTTTTCTTCACCCTGTTGTTATGGTTACCTGttctggtttttgtttggcaCATTATTTACCTGTTCAGGGACACGGGGCAGTAGATGTTTTtgcgttactgtgtgtgtgtgtctcattcttaatgtgtgtgtattagatGAATGTTTACAGGCTTCCCAGCCAACCAATAATGAATAGACAGAAGTGTGGTGGAATACTCACCAAGTTAAAGAATGAGtcctaaatggtaccctattccctatgtagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagggccctattccccatatatagtggtactactttagaccagggccctattccctatatagtggtactactttagaccagggccctattccctatatagtggtactgctttagaccagggccctattccctatatagtgcactactttagaccagggccctattccctatgtagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactttagaccagggccctattccctatatagagccctatgggccctggtctaaagtagtgcactacatagggaatagggccctggtcgatactagtgcactacatagagaatagagcACTATGGAACCATTTTAGGAACCAAAAACTATATTTAATTGGTCTAGGATCAGGATCAACACTGTTACTACCCATTCTACCATTAGGatggtaccccaacactgttaccatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggatggtaccccaacactgttactacccattctaccattaggttggtaccccaacactgttactatccattctaccattaggttgatACCCCAACAGtgttactatccattctaccattaggttgataccccaacactgttactatccattctaccattaggttgataccccaacactgttactatccattctaccattaggttgataccccaacactgttactaccCATTCTACCAGTAGGTTgataccccaacactgttactatccattctaccattaggttgataccccaacactgttactgtccattctaccattaggttggcaccccaacactgttactatccattctaccattaggttgatACCCTAACACTGTTACTGtccattccaaatcaaatcaaatgtatttgtcacatacacatggttagcagatgttgttaatgcgagtgtagcgaaatgattgtgcttctagttccgacaatgcagtaataaccaacaagtaataacctaacctaacaattccacaactatttccttatacacacaagtgtaaagggataaagaatatgtacataaagatatatgaatgagtgatggttacagaacggcataggcaagatgcagtagatggtatcgagtacagtatatacatatgagatgagtaaagtggCATAGTTGGGgtaccattaggttggtaccccaacactgttactgtccattctaccattaggttgataccccaacactgttactgtccattaggttggtaccccaacactgttactatccattaTACCATTAGGTTGATACCCCAGCATtgttactatccattctaccattaggttggtaccccaaaACTGTTACTATCCATGCaaccattaggttggtaccccaacactgttactatccattctaccattaggttggtaccccaacactgttactatccattctaccattaggatggtaccccaacactgttactatccattaggttggtaccccaacactgttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057261 False 1197 lncRNA 0.42 2 81067884 81311453
TU1057264 False 579 lncRNA 0.43 2 81184885 81312003
TU1057265 False 976 TUCP 0.47 5 81184885 81313748
TU1057266 False 2749 lncRNA 0.44 6 81283626 81313748
TU1057267 True 2252 lncRNA 0.43 3 81283626 81311623

Neighbor

gene id symbol gene type direction distance location
LOC110514786 LOC106592710 coding upstream 53633 80942545 ~ 81014251 (+)
LOC118936804 NA coding upstream 131823 80935213 ~ 80936319 (+)
trnae-cuc-165 NA coding upstream 137717 80930096 ~ 80930167 (+)
LOC110515606 LOC106597156 coding upstream 145246 80723535 ~ 80922638 (+)
LOC118936381 LOC105020813 coding upstream 354120 80691018 ~ 80713764 (+)
LOC110510686 LOC106597603 coding downstream 59835 81373583 ~ 81386366 (+)
LOC110518956 LOC106595358 coding downstream 172848 81486596 ~ 81506482 (+)
LOC118936817 NA coding downstream 189461 81503209 ~ 81504564 (+)
LOC110513527 LOC106595035 coding downstream 212766 81526514 ~ 81534991 (+)
LOC118936818 LOC106576580 coding downstream 244996 81558744 ~ 81615329 (+)
G928701 NA non-coding upstream 3720 81063706 ~ 81064164 (+)
G928697 NA non-coding upstream 6966 81060576 ~ 81060918 (+)
G928692 NA non-coding upstream 22902 81044379 ~ 81044982 (+)
G928685 NA non-coding upstream 50242 81016803 ~ 81017642 (+)
G928840 NA non-coding downstream 9785 81323533 ~ 81353606 (+)
G928841 NA non-coding downstream 15264 81329012 ~ 81426368 (+)
G928704 LOC106592660 non-coding downstream 25985 81339733 ~ 81436602 (+)
G928710 NA non-coding downstream 27100 81340848 ~ 81436999 (+)
G928846 NA non-coding downstream 47045 81360793 ~ 81363179 (+)
G928335 NA other upstream 751315 80311944 ~ 80316569 (+)
G928206 NA other upstream 1039665 80027002 ~ 80028219 (+)
LOC110532970 LOC105020822 other upstream 1310840 79727045 ~ 79782057 (+)
LOC110514189 LOC106593948 other upstream 1467112 79597075 ~ 79601686 (+)
G928765 NA other downstream 35788 81349536 ~ 81350331 (+)
G928741 NA non-coding upstream 30295 81150765 ~ 81154590 (+)
G928736 NA non-coding upstream 49380 81133594 ~ 81135505 (+)
G928728 NA non-coding upstream 66963 81116610 ~ 81117922 (+)
G928726 NA non-coding upstream 69726 81114721 ~ 81115159 (+)
G928722 NA non-coding upstream 76926 81100894 ~ 81107959 (+)
G928731 NA other upstream 64008 81119565 ~ 81120877 (+)

Expression


Co-expression Network