G928782


Basic Information

Item Value
gene id G928782
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81263442 ~ 81352839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057383
ctggtgtcctcaggttTAGGCTTgatccaactctctccaccatggtctctggtgtcctcaggtccaggcttgatccaatactctccaccatggtctctggatTTGGTAAAGCAGAAGGATAGACTGTGATTAAACTAAATACAACTTACACAGGCTTTATATAGCATACATACAGTCTTCATAAGCAGTACAAAGGGTGTATAAATGTTGACAGACTAGCTCCCTATGTAGGGTGCATTGCCtaaatgtgacataacccactatgtcaACTTCCATGAAGTCAATACTAATGGTGACATTACAGGTGACATTGCATAGCCCTTAGTGAGGTGaagtcaccaggtatcatgagttacattcccccctagagatgaagtcaccaggtatcatgagttacatacccccctagagatgtgaagtcactaggtatcatgagttacatacccccctagagatgtgaagtcaccagGTATCAACCTCCACACACATACGTCCCCCTCATAAAACACTGAGCTTGTGCCACATCTAACTGTCTGTTGGTCCAAGAGAACACAGTAaaaaacaccactactactaatctaactgtAGAAATGATTCCAGGGGAAAACAAATGATGAAACATTGCTATGACTCACCTCTGAATGTGTTGGTCATCTATCTGACACAgggtcactgaggaggaggagtaaaCCCCAAATCCAGGATAGAGGGGTTCAGTGAatgtggtgtgttctgtgtgaaGGTGTGTCAGTGTACCAGAGGAGGACACACTATAGAAGGACAAAGTACCAGCTGGCCAGTCCAGATATACTCCAACTCTGTGAGAATAACGACCAGAGATGGATCTGCTGACTCCAGCATGGATAAATTCATAAGCACTATCATAGCAGTATAAACACCAGGACTTCCTATTGAGTCCAATCCAACTGTCATCCTCCCGTCCCTTCCTCTTCATTCCTTTGTACACCACACCAATGTCAGCCATgtcaccatccctgtccacctcCCAGTAATAACGACATCCAGAAATGACTTCACTGCATACAACTTGGCAATGACAATCAAATCTGTCTGGATGGTCTTCATAATGCTGCTCCTTCAACACCCGTGTCACCTTCCTGTTCCCCTCAGACAGTCTCAGGTGTGGGTGTGCTGTATCTGGGTCCAGGGTGAGATGACAGGCATCTGTAGATGAAAGGAGAGTTTAATCAAACCACATCTTCACATAAAATGTTGTTTTGTAGGTACAGAACAAGTATTGATTGGTTACTATGTTACTATAGTTCTGAATATGCAGTTAATTAGGAT
>TU1057385
ctggtgtcctcaggttTAGGCTTgatccaactctctccaccatggtctctggtgtcctcaggtccaggcttgatccaatactctccaccatggtctctggatTTGGTAAAGCAGAAGGATAGACTGTGATTAAACTAAATACAACTTACACAGGCTTTATATAGCATACATACAGTCTTCATAAGCAGTACAAAGGGTGTATAAATGTTGACAGACTAGCTCCCTATGTAGGGTGCATTGCCtaaatgtgacataacccactatgtcaACTTCCATGAAGTCAATACTAATGGTGACATTACAGGTGACATTGCATAGCCCTTAGTGAGGTGaagtcaccaggtatcatgagttacattcccccctagagatgaagtcaccagatatcatgagttacattcccccctagagatgaagtcaccaggtatcatgagttacattcccccctagagatgaagtcaccaggtatcatgagttacattcccccctagagatgtgaagtcaccaggtatcatgagttacacCCCCCCTAGAGATGTGAAGTCACCAGGTATCACGAGTTACATACCACCCTAGAGATGTGAAGTCACCAGGTATCAACCTCCACACACATACGTCCCCCTCATAAAACACTGAGCTTGTGCCACATCTAACTGTCTGTTGGTCCAAGAGAACACAGTAaaaaacaccactactactaatctaactgtAGAAATGATTCCAGGGGAAAACAAATGATGAAACATTGCTATGACTCACCTCTGAATGTGTTGGTCATCTATCTGACACAgggtcactgaggaggaggagtaaaCCCCAAATCCAGGATAGAGGGGTTCAGTGAatgtggtgtgttctgtgtgaaGGTGTGTCAGTGTACCAGAGGAGGACACACTATAGAAGGACAAAGTACCAGCTGGCCAGTCCAGATATACTCCAACTCTGTGAGAATAACGACCAGAGATGGATCTGCTGACTCCAGCATGGATAAATTCATAAGCACTATCATAGCAGTATAAACACCAGGACTTCCTATTGAGTCCAATCCAACTGTCATCCTCCCGTCCCTTCCTCTTCATTCCTTTGTACACCACACCAATGTCAGCCATgtcaccatccctgtccacctcCCAGTAATAACGACATCCAGAAATGACTTCACTGCATACAACTTGGCAATGACAATCAAATCTGTCTGGATGGTCTTCATAATGCTGCTCCTTCAACACCCGTGTCACCTTCCTGTTCCCCTCAGACAGTCTCAGGTGTGGGTGTGCTGTATCTGGGTCCAGGGTGAGATGACAGGCATCTGTAGATGAAAGGAGAGTTTAATCAAACCACATCTTCACATAAAATGTTGTTTTGTAGGTACAGAACAAGTATTGATTGGTTACTATGTTACTATAGTTCTGAATATGCAGTTAATTAGGAT
>TU1057384
ccggacagcgctaggccaattgtgcgccgccctcacggccggttgcgatacagcccgggatcgaaccctgGTCTGCGACACTCAGGATCCCTCAGGTGGACATTGCTTATAGATGTGaagtcaccaggtatcatgagttacattcccccctagagatgaagtcaccagGTATCACGAGTTACATACCACCCTAGAGATGTGAAGTCACCAGGTATCAACCTCCACACACATACGTCCCCCTCATAAAACACTGAGCTTGTGCCACATCTAACTGTCTGTTGGTCCAAGAGAACACAGTAaaaaacaccactactactaatctaactgtAGAAATGATTCCAGGGGAAAACAAATGATGAAACATTGCTATGACTCACCTCTGAATGTGTTGGTCATCTATCTGACACAgggtcactgaggaggaggagtaaaCCCCAAATCCAGGATAGAGGGGTTCAGTGAatgtggtgtgttctgtgtgaaGGTGTGTCAGTGTACCAGAGGAGGACACACTATAGAAGGACAAAGTACCAGCTGGCCAGTCCAGATATACTCCAACTCTGTGAGAATAACGACCAGAGATGGATCTGCTGACTCCAGCATGGATAAATTCATAAGCACTATCATAGCAGTATAAACACCAGGACTTCCTATTGAGTCCAATCCAACTGTCATCCTCCCGTCCCTTCCTCTTCATTCCTTTGTACACCACACCAATGTCAGCCATgtcaccatccctgtccacctcCCAGTAATAACGACATCCAGAAATGACTTCACTGCATACAACTTGGCAATGACAATCAAATCTGTCTGGATGGTCTTCATAATGCTGCTCCTTCAACACCCGTGTCACCTTCCTGTTCCCCTCAGACAGTCTCAGGTGTGGGTGTGCTGTATCTGGGTCCAGGGTGAGATGACAGGCATCTGTAGATGAAAGGAGAGTTTAATCAAACCACATCTTCACATAAAATGTTGTTTTGTAGGTACAGAACAAGTATTGATTGGTTACTATGTTACTATAGTTCTGAATATGCAGTTAATTAGGAT

Function

NR:

description
NLR family CARD domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057383 False 1308 lncRNA 0.44 4 81263442 81352839
TU1057385 False 1432 lncRNA 0.44 4 81263442 81352839
TU1057384 True 1050 lncRNA 0.46 4 81296039 81352839

Neighbor

gene id symbol gene type direction distance location
LOC118936811 LOC106593215 coding upstream 16091 81239097 ~ 81247351 (+)
LOC110530284 LOC106592313 coding upstream 43045 81217975 ~ 81220397 (+)
LOC110514786 LOC106592710 coding upstream 249191 80942545 ~ 81014251 (+)
LOC118936804 NA coding upstream 327381 80935213 ~ 80936319 (+)
trnae-cuc-165 NA coding upstream 333275 80930096 ~ 80930167 (+)
LOC110510686 LOC106597603 coding downstream 20744 81373583 ~ 81386366 (+)
LOC110518956 LOC106595358 coding downstream 133757 81486596 ~ 81506482 (+)
LOC118936817 NA coding downstream 150370 81503209 ~ 81504564 (+)
LOC110513527 LOC106595035 coding downstream 173675 81526514 ~ 81534991 (+)
LOC118936818 LOC106576580 coding downstream 205905 81558744 ~ 81615329 (+)
G928706 LOC106591435 non-coding upstream 6352 81254642 ~ 81257090 (+)
G928810 NA non-coding upstream 14523 81248384 ~ 81248919 (+)
G928808 NA non-coding upstream 18728 81244121 ~ 81244714 (+)
G928805 NA non-coding upstream 27815 81228531 ~ 81235627 (+)
G928846 NA non-coding downstream 7954 81360793 ~ 81363179 (+)
G928853 NA non-coding downstream 38874 81391713 ~ 81393673 (+)
G928750 NA non-coding downstream 53884 81406723 ~ 81439976 (+)
G928784 NA non-coding downstream 56347 81409186 ~ 81445032 (+)
G928865 NA non-coding downstream 77490 81430329 ~ 81432413 (+)
G928731 NA other upstream 142565 81119565 ~ 81120877 (+)
LOC110515606 LOC106597156 other upstream 432787 80723535 ~ 80922638 (+)
G928335 NA other upstream 946873 80311944 ~ 80316569 (+)
G928206 NA other upstream 1235223 80027002 ~ 80028219 (+)
LOC118936819 LOC106602658 other downstream 282899 81617460 ~ 81672338 (+)

Expression


Co-expression Network