G928756


Basic Information

Item Value
gene id G928756
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81271764 ~ 81356117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057344
AGTGCTCTCTTGCAGGTTCTCACTACCGGCAGCAACCTCTGATAACCTTTCTCTGATGTGTTGTATGTCTTCAGGTCAAActcctccagcacctcctctgACATCAGTAACAGGTAGGCCAGGGCTGAACATTGGTCAGGTTTTAGTCTTGTTTCTGAAAGAGTTCCTGAATGCAGGGAGGTCTGCATGTCTTCAACAAGAGAGTTGGCACCaagttcattcagacagtggaacaaGTTGATGATCCTTTCTGGTGAGGATTCCTCCTTGATGTTGTCTGTAAGGTACTTGACTGTTCTCTCAACTGTTTCCTCATTGGTCTGTGTGGTACATCCTGTCTGTGTCAGAAGGCCTCGTAACAGATTCTGATTGGACGCCAGTGAGAGACCCAGAAGGAAGCAGAGGAACAGGTCCAGGTGTCCAATCTCACTCTTCAAGGCCTGGTCCACTGCTCTCCTGTGTAAGTCAGACAACTGGATTGACTCCTCTTTATCATTGTCATCCTTTTTGTCTTCATCGGAATCATCATCATCGGAATCATTATCATCGATTGACGTCAACTTGTCAGGCTTCAACTTGCACGACCAGAATTTGAATCGGCTGTTTTCATAATAATCTTGACCCTTAGTGACTGCTTTGGGGGAGAAAACATTTTCCTTCTTGCACAGACATGTTTCTAAAGCATGCACTGCTGCTAGAAACTCTTGAATGCTCAGATGCACAAAGCTGTAGACCTTGTCTTGGTACAGCCCAGATTCTTCTTTAAAGATCTCTGTACACAATGCTGAGTACTCTGATGCCTCTGTGACATCAAGGCCACACTCTCTCAGGTCCTCCTCATAGAAGATCAGGTTGCCCTTCTGCAGCTGTTGGAAAGCCAGCTTTGCCAGTTTCAGGATCATCTCTTTGTCTGACTGAGACAGTTCCTTTGGGTTTGTCTCTGTGGCTTTGTTGTACTTCCTGTTCTCCACAATGATTTGGATCATGAAGTGTGAGTACATCTGGGTCAGAGTTTTGGGGACTTCATCCTTCTCTGCCTCTTTCAGCATCATCTCAAGGACAGTGGCTGATATCCAACAGAAGACTGGcatgtggcacatgatgtggaggctccttgatgtcttCATGTGTTTGATGATTTCATTGGCCAGATTCTGATCTGTGATTTTCTTCCTGAAATACTCCTCCTTCTGTGGAtcattgaaccctcgtacctctgtcaTCTGGTCAACACACTCAGGAGGGATCTGATTGGCTGCTGCAGGCCTTGAGGTTATCCAGAtgagagcagagggaagcagattCCCCTTGATGAGATTTGTCAGCAGCACGTCCACTGAGGTTGGTTTCGTGACATCACAGCATTTCTCATTGTTTTTGAAGTCTAGAGGAAGTCGacactcatccagaccatcaaaaATGAAAACAGTTTTGGTTTCACCATCTTCAATGCTGTCAATCTCTTTCAGCTCTGAGAAGTAGTGGGCAAGAAGTTGCATCAGACTGTATTGGTCCTTTTTCAGGTTCAGATCACGGAAAGGAAGAGGAAACATGAAATGAACGTCCTGATTTGCTTTTCCTTCTGCCCAGTCAAGGATGACcttctgcacagagactgtttttccaatgccagcgaTTCCTTTGGTCAGCACAGTTTTGATAGGTTTGTCTTGTCCAGGTAAAGGCTTGAAGATGTCGTTGCATTTGATTGGTGTCTCTTGTGTGGTTAGTTTCTTGGATGCCATCTCGATCTGTCTAATCTCATGTTCATTATTGAGCCCTCCACttccaccctctgtgatgtagagGTCTGTGTAGATGTCCTTGAACAAACTTTGATTTCCATGGTGTCCAATTCCTTCAGATATGTGTTGATACTTGTGTTTCAGTTTAGCCTTAACGTCTTGTTGGACTGTCAGCAGAGTTTGAC

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057344 True 1930 lncRNA 0.45 3 81271764 81356117

Neighbor

gene id symbol gene type direction distance location
LOC118936811 LOC106593215 coding upstream 24413 81239097 ~ 81247351 (+)
LOC110530284 LOC106592313 coding upstream 51367 81217975 ~ 81220397 (+)
LOC110514786 LOC106592710 coding upstream 257513 80942545 ~ 81014251 (+)
LOC118936804 NA coding upstream 335703 80935213 ~ 80936319 (+)
trnae-cuc-165 NA coding upstream 341597 80930096 ~ 80930167 (+)
LOC110510686 LOC106597603 coding downstream 17466 81373583 ~ 81386366 (+)
LOC110518956 LOC106595358 coding downstream 130479 81486596 ~ 81506482 (+)
LOC118936817 NA coding downstream 147092 81503209 ~ 81504564 (+)
LOC110513527 LOC106595035 coding downstream 170397 81526514 ~ 81534991 (+)
LOC118936818 LOC106576580 coding downstream 202627 81558744 ~ 81615329 (+)
G928706 LOC106591435 non-coding upstream 14674 81254642 ~ 81257090 (+)
G928810 NA non-coding upstream 22845 81248384 ~ 81248919 (+)
G928808 NA non-coding upstream 27050 81244121 ~ 81244714 (+)
G928805 NA non-coding upstream 36137 81228531 ~ 81235627 (+)
G928846 NA non-coding downstream 4676 81360793 ~ 81363179 (+)
G928853 NA non-coding downstream 35596 81391713 ~ 81393673 (+)
G928750 NA non-coding downstream 50606 81406723 ~ 81439976 (+)
G928784 NA non-coding downstream 53069 81409186 ~ 81445032 (+)
G928865 NA non-coding downstream 74212 81430329 ~ 81432413 (+)
G928731 NA other upstream 150887 81119565 ~ 81120877 (+)
LOC110515606 LOC106597156 other upstream 441109 80723535 ~ 80922638 (+)
G928335 NA other upstream 955195 80311944 ~ 80316569 (+)
G928206 NA other upstream 1243545 80027002 ~ 80028219 (+)
LOC118936819 LOC106602658 other downstream 279621 81617460 ~ 81672338 (+)

Expression


Co-expression Network