G928707


Basic Information

Item Value
gene id G928707
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81281371 ~ 81310159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057272
TTCCATTCCTTTTCCTGtcatttattgaaaatgtatttgaCAGAGGTACTTCGCATCAGTCATAATTTCTGTAAATGTGACagatttagccagctagctagtttaactCTAGTTCCTGGGCAGGTAGATCAACGTAGGTCGAACAGCTCCTTATATGTCCTTCAGACACTCTCAAGTAATTGGTAAAGGAGTGACAGGTCACACAGCTCCTTATATGTCCTTCAGACACTCTCAAGTCATTGGTAAAGGAGTGACAGGTCACACAGCTCCTTATATGTCCTTCAGACACTCTCAAGTCATTGGTAAAGGAGTGACAGGTCACACATCTCCTTATATGTCCTTCAACCACTCAAGTCATTGGTAAAGGGGTGACAGGTTACACAGCTCCTTATATGTCCTTCAATGGTCAATGTGTTCCAGACATGAGGCTCTCACTGAGAAAACTGCTGATAGACTGAGATGGTTGTGTTGATATTCAGCCTCTCTCATGAACCTCTAACAGGCCAACACTGTACAATATATTCATCAAATACATTTATGTGGTTTTAAGTTGAATGCCAAATACTTAgagccagtttcccagacacattcACAGTGAGTATGCAAATACAGTAAGTACATTccaataacatcacaatacatgtttacaatatatatacaatacaatctcctccaatagggtgtcatttcagatggTAGTCCTagactctcctcatctcctccaatagggtgtcatttcagatggtaatcctagcctcccctcatctcctccaataGGGTGTCATTACAGATGGTAATCTTAgactcccctcatctcctccaatagggtgtcatttcagatggtaatcctagactcccctcatctcctccaatagggtgtcatttcagatggtaatcttcgactcccctcatctcctccaatagggtgtcatttcagatggtaatcctagactctcctcatctcctccaatagggtgtcatttcagatggTAGTCCTagactctcctcatctcctccaatagggtgtcatttcagatggtaatcttagtctcccctcatctcctccaatagggtgtcatttcagatggAAGTTCGTTTTctaatactcatactaaccatactaaccacactatttgtgacgtgaattgagtatatagtaCGCTTAATGGTCATAGTATGATATAgtttagtatgccaaaagtttcCGGATATCGT
>TU1057273
TTCCATTCCTTTTCCTGtcatttattgaaaatgtatttgaCAGAGGTACTTCGCATCAGTCATAATTTCTGTAAATGTGACagatttagccagctagctagtttaactCTAGTTCCTGGGCAGGTAGATCAACGTAGGTCGAACAGCTCCTTATATGTCCTTCAGACACTCTCAAGTAATTGGTAAAGGAGTGACAGGTCACACAGCTCCTTATATGTCCTTCAGACACTCTCAAGTCATTGGTAAAGGAGTGACAGGTCACACAGCTCCTTATATGTCCTTCAGACACTCTCAAGTCATTGGTAAAGGAGTGACAGGTCACACATCTCCTTATATGTCCTTCAACCACTCAAGTCATTGGTAAAGGGGTGACAGGTTACACAGCTCCTTATATGTCCTTCAATGGTCAATGTGTTCCAGACATGAGGCTCTCACTGAGAAAACTGCTGATAGACTGAGATGGTTGTGTTGATATTCAGCCTCTCTCATGAACCTCTAACAGGCCAACACTGTACAATATATTCATCAAATACATTTATGTGGTTTTAAGTTGAATGCCAAATACTTAgagccagtttcccagacacattcACAGTGAGTATGCAAATACAGTAAGTACATTccaataacatcacaatacatgtttacaatatatatacaatacaatctcctccaatagggtgtcatttcagatggTAGTCCTagactctcctcatctcctccaatagggtgtcatttcagatggtaatcctagcctcccctcatctcctccaataGGGTGTCATTACAGATGGTAATCTTAgactcccctcatctcctccaatagggtgtcatttcagatggAAGTCCGTTTTctaatactcatactaaccacactaaccgtactatttgtgacgtgatttgagtatatagtatgcttattggtcatagtatgatATAGTTTAGtttgccaaaagttcccggatctCGTACGTATTCGCCAAAATATTAAATTTACAAGCAGAACACACTAATTCCATACTttgggcccataatgcaattcttcatgAAGTGGGCGGGGCTTCACATCGTTTTCAGATTTGAATAAAATAGTGGAAAATATGTTGCTGAAGTCCAacgagagcggatacaaattAATTGCTTTAACAAATTTTGACAAATGTTAAGAACAttttgagcaatgtaataaagtaattacttttcaaataagttaccttacacgttatgttggctgataATTTGctagctacgctgtccttacgaaccacacaTCATATCATTACAGctgtatgtaccggtatgttagctacctACCTAACGCTACAGTAGTTGGCTACTTATACATCAAACGTGTCAGTATATTAACTACAGGCCAACTAACTActcaacgtttattgacttgattattcccgtcattcttcgcttagctaaatggtatagtcgttgtgctttcgtaaattctctctgtctctactccgatttcagagcatcTCGCCTGAGagaccagagcgcagaataatgaatttacgaggcgctcaacacccgttgaatatgaccagtgtcagtaaacatcgggggaaaaaaacgtaattaaattgtttccagcagcaccagaaagctcaaatcaaccctactcctctgtCTGAGCGTCcagcactccagattgaatttaataACACACCCAAAGTCGAACAATGTCTAACTAGTAATTTgttacgctaactagctagcaagaggttgcatagcaacagcatcaacttccgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057272 False 1215 lncRNA 0.41 3 81281371 81309363
TU1057273 True 1764 lncRNA 0.40 2 81281371 81310159

Neighbor

gene id symbol gene type direction distance location
LOC118936811 LOC106593215 coding upstream 34020 81239097 ~ 81247351 (+)
LOC110530284 LOC106592313 coding upstream 60974 81217975 ~ 81220397 (+)
LOC110514786 LOC106592710 coding upstream 267120 80942545 ~ 81014251 (+)
LOC118936804 NA coding upstream 345310 80935213 ~ 80936319 (+)
trnae-cuc-165 NA coding upstream 351204 80930096 ~ 80930167 (+)
LOC110510686 LOC106597603 coding downstream 63424 81373583 ~ 81386366 (+)
LOC110518956 LOC106595358 coding downstream 176437 81486596 ~ 81506482 (+)
LOC118936817 NA coding downstream 193050 81503209 ~ 81504564 (+)
LOC110513527 LOC106595035 coding downstream 216355 81526514 ~ 81534991 (+)
LOC118936818 LOC106576580 coding downstream 248585 81558744 ~ 81615329 (+)
G928706 LOC106591435 non-coding upstream 24281 81254642 ~ 81257090 (+)
G928810 NA non-coding upstream 32452 81248384 ~ 81248919 (+)
G928808 NA non-coding upstream 36657 81244121 ~ 81244714 (+)
G928805 NA non-coding upstream 45744 81228531 ~ 81235627 (+)
G928840 NA non-coding downstream 13374 81323533 ~ 81353606 (+)
G928841 NA non-coding downstream 18853 81329012 ~ 81426368 (+)
G928704 LOC106592660 non-coding downstream 29574 81339733 ~ 81436602 (+)
G928710 NA non-coding downstream 30689 81340848 ~ 81436999 (+)
G928846 NA non-coding downstream 50634 81360793 ~ 81363179 (+)
G928731 NA other upstream 160494 81119565 ~ 81120877 (+)
LOC110515606 LOC106597156 other upstream 450716 80723535 ~ 80922638 (+)
G928335 NA other upstream 964802 80311944 ~ 80316569 (+)
G928206 NA other upstream 1253152 80027002 ~ 80028219 (+)
G928765 NA other downstream 39377 81349536 ~ 81350331 (+)

Expression


Co-expression Network