G928709


Basic Information

Item Value
gene id G928709
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81286535 ~ 81316479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057275
aaccaggctaatctacatcacgtcctggaggagatgtcattggggcattcagaaccaggctaatctacatcacgtcctggaggagatgtcattggggcattcagaaccaggctaatctacatcaagtcctggaggagatgtcattggggcattcagaaccaggctaatctacatcaactcctggaggagatgtcattggggcattcagaaccaggctgatctacatcaagtcctggaggagatgtcattggggcattcagaaccaggctaatctacatcacgtcctggaggagatgtcattgggacattcagaaccaggctaatctacatcaagtcctggaggagatgttattggggcattcagaaccaggctaatctacatcaagtcctggaggagatgtcattgTTCTTGAAGACAGTCTTTTATAATCAGGACTAGTCCAGGTCCTACAGTAAACCATGTTGACTGACCCTCAAGTCATTGGTTTGTATCTCTCATGTTTACTTACTAGTTGAATGGGTTTCAGTGATGAATTCATCTGAAATAAACATACATTGGTTATATCACTAAATAGTATCTGTCAGAAAAAGTTGTGATTGACATGTTCTCCTACATTTTTGTACAGTTTCTTTCCATACTATCCTCTCATCATCACCGATTAACTCCATCTCAATCCCTGTAATTTCCATATCCACCTTGAAAAAGCTTGGTGTGGTGTCTCTATGTATGAGATGAATcctctggggggagggagggagagagagcgagagaggttaaACAAAAACATGGTTAAACATTAATTAAAAACACAACACCAAATCTTCCGCCACAGTAACTAAAAACAACAGCCTCTAAATACCCCATATACTCAAACAGATCAATGTTAACCATTTTGTAACAGGCAAACTCAACCCTCAGTCTGGCTGCCAACATCCCCTCCAGCATTCCCACCACGTCCACAGTCCCCTGTTCCCGAATACTGTTCTTTCATGTCTATCAAATTGATAATTTAGCTGCCCCTGACACAAAGTTAAGTAAGAGAACAACACCCCTTCTACTAAACCTGTACTTTGTCCCAAATATAAACATTTGGGAAGAAAAAACCTCTCCCAGAGCTGAGAACCAACCAGTGATCAGGTCAATCATCTCGACCAACCTGGGACACTGTAAGAACAGATGTGTCAGAGTTTCAGACTCAgcacagaatggacacccctccccaacatgGTGAAAACTCTCCAAGCCTGTATAATAGACTTATAGAATGGAGTCAGACCAGacaaatcaccccccccccccctccagcttTAAGAGGAAACTCTCCAAGCCTGCATAACAGACTCATAGAATGGAGTCAGGCCAGACAAATCACCCCCCTCCATCTTTAAGAGGAAAAGTTGCTTGTCTAAGCAAAACAGCCTGCTCTCCTCATCAATGTGTCGGCTGTATCCACCCAGCTAGAACCGTCacagtacaacagtctctgggctgcatGAAGCCAGAAAGCCATGATCCAAGAAGAGATGTCCACCAGGCCTTGTGTAACAGTTTAGACTTTACACCCATcccctcgccccaacctgggcgcgaaccagggacgctctgcacacgtcaacagtcaccctcttggcatcgttacccatcgccccacataagccgtggcccttgcagagcaaggggaaccactacttcaaggtcttagagcaagtgacgtcactgattgaaatgctattagcgcgcaccaccgctaactagctagccatttcacaccggttacactcacctcccttttgacctcctccttttccgcagcaaccagtgatccgggtcacggcaccaatgtaacagtttaactttagacaatatatcagtcctgaaattgggcatccctgcctgatgCCCCTTTGGATGGGGATGGGGCAGCTCAACCCACCCTCCCCATACACGAGGCCCCAGCAGACAGTAAACTCAtccaagacaaaaaaaacatccccaaacccaaAGGCTTTCATTGTTTTAAACATGGTGGTCCACACGATCAAAAGCCTTCTTCATTCTATATACCTGTTTGAGAGACACGTAGATATCATTTAAAATTCTGCACACAGCAATGCAACAAGTTGGCAGTTTTTTTTAAAAGGGCCAAATCCCCCCCCTTTTGCAACAATGAAAGCACAACACGTTgacaggatacaggaagagaaTACTCATGACAAGATTCACACACCACTTCATAAAAATCCCCCCCAATAGACAGCTGGGGTAGCACCCCAGTGCTTATAGAACTCAGATTGTAAAACATTGATGCCAGGGGCTCCGGGGTCCATCTGAGTGAGCAACTTCAATTCAATAGATGTGATGTCCTGTTTAAGGGCCCTGATAGTCTCTTTAACTCAATACTAGACGgagcagtatactgttgacaaGACACACGTATTTGGGCCTTCCCAACCACCCACCATTGTCTCAAGGATTCAAAATTCAAATTAATAACCCTCAATTTTTCCCAAAACACCAAAAACCTTTCCCAAAACATTGCGTCATGTAATATCTTCATGTTGAAATACCATGACAAGTGAATATCAACAGTAACAATATGGTGATCAGAAAAACCCTCAGGAGTAATGTCACCTTACAACCCTActgcagtagtgatcagatacatacaacctgtttAACCTTGCTGCACCGACACCACCTTCATTAACTACTACAGTAGAGCTCAGAtaatacaacctgtctaaccttgctgcaccgacaccaccttcattaaatactacagtagagctcagatacatacaacctgtctaaccttgctgcagcgacaccaccttcattaactactac

Function

NR:

description
Transposon TX1 hypothetical protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057275 True 2848 lncRNA 0.45 2 81286535 81316479

Neighbor

gene id symbol gene type direction distance location
LOC118936811 LOC106593215 coding upstream 39184 81239097 ~ 81247351 (+)
LOC110530284 LOC106592313 coding upstream 66138 81217975 ~ 81220397 (+)
LOC110514786 LOC106592710 coding upstream 272284 80942545 ~ 81014251 (+)
LOC118936804 NA coding upstream 350474 80935213 ~ 80936319 (+)
trnae-cuc-165 NA coding upstream 356368 80930096 ~ 80930167 (+)
LOC110510686 LOC106597603 coding downstream 57104 81373583 ~ 81386366 (+)
LOC110518956 LOC106595358 coding downstream 170117 81486596 ~ 81506482 (+)
LOC118936817 NA coding downstream 186730 81503209 ~ 81504564 (+)
LOC110513527 LOC106595035 coding downstream 210035 81526514 ~ 81534991 (+)
LOC118936818 LOC106576580 coding downstream 242265 81558744 ~ 81615329 (+)
G928706 LOC106591435 non-coding upstream 29445 81254642 ~ 81257090 (+)
G928810 NA non-coding upstream 37616 81248384 ~ 81248919 (+)
G928808 NA non-coding upstream 41821 81244121 ~ 81244714 (+)
G928805 NA non-coding upstream 50908 81228531 ~ 81235627 (+)
G928840 NA non-coding downstream 7054 81323533 ~ 81353606 (+)
G928841 NA non-coding downstream 12533 81329012 ~ 81426368 (+)
G928704 LOC106592660 non-coding downstream 23254 81339733 ~ 81436602 (+)
G928710 NA non-coding downstream 24369 81340848 ~ 81436999 (+)
G928846 NA non-coding downstream 44314 81360793 ~ 81363179 (+)
G928731 NA other upstream 165658 81119565 ~ 81120877 (+)
LOC110515606 LOC106597156 other upstream 455880 80723535 ~ 80922638 (+)
G928335 NA other upstream 969966 80311944 ~ 80316569 (+)
G928206 NA other upstream 1258316 80027002 ~ 80028219 (+)
G928765 NA other downstream 33057 81349536 ~ 81350331 (+)

Expression


Co-expression Network