G928783 (LOC106594467)


Basic Information

Item Value
gene id G928783
gene name LOC106594467
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81296632 ~ 81323503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057386
ATCATGAGTTACATACCCCCCTAGAGATGTGACGTCACGTGCTATGTGAGACTAgataaaataaatgcttcaaaatcATCATGTTGCTCCTCAGTCCTCACCTGTAAACACATcactaatctaactgtctgtgGGTCCAACAGAACCCATTAAAACACACCACTACcactaatctaactgtctgtaggtccaacagaacccattaaaacacaccactactactaatctaaTTGTAGGAATGATTCCAGAGGAAACAAATGATGAAACATTGCTATGACTCACCTCTGAATGTGTTGGTCATCTATCTGACACAgggtcactgaggaggaggagtaaaCCCCAAACCCAGGATAGAGGGGTTCAGTGAatgtggtgtgttctgtgtgaaGGTGTGTCAGTGTACCAGAGGAGGACACACTATAGAAGGACAAAGTACCAGCTGaccagtccagatacactccaACTCTGTCAGAATCAGGACCAGAGATGGATCTGCAGAATGCAGTATGGTTAAATTCATAACCACTATGAGAGCAGTATAAACACCAGGATTCCCTATTGGATCCAATCCAACTGTcatcctcccttcccttcctcttcaTTCCTTTGTACACCACACCAATGTCAGCCCCGGTAccatccctctccacctcccagtaATAACGACCTCCAGATAAGCCTTCTCTGCAGAGAACTTGGTACAGAGAGTCAAATCTGTCTGGATGGTCTTCATAAGGCTGCTTCTCCACCACCCGTGTCACCTTTCTGTTCCCCTCAGACAGTATCAGGTTTGGGTTTTCTGTATTTGGGTCCATAGTGAGATGACAGGCATCTGTAGACAAAATGAGAGTTTAATCAAACCACATCTTCATATAAAATGTTGTTTTGTAGGTACAGAACAAGTATTGATTAGTTACTATGTTACTATAGTTCTGAATATACCGTTAATTAGGATTGAAGAGACTTACATTTCCTCAGCCCTG

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057386 True 983 lncRNA 0.43 3 81296632 81323503

Neighbor

gene id symbol gene type direction distance location
LOC118936811 LOC106593215 coding upstream 49281 81239097 ~ 81247351 (+)
LOC110530284 LOC106592313 coding upstream 76235 81217975 ~ 81220397 (+)
LOC110514786 LOC106592710 coding upstream 282381 80942545 ~ 81014251 (+)
LOC118936804 NA coding upstream 360571 80935213 ~ 80936319 (+)
trnae-cuc-165 NA coding upstream 366465 80930096 ~ 80930167 (+)
LOC110510686 LOC106597603 coding downstream 50080 81373583 ~ 81386366 (+)
LOC110518956 LOC106595358 coding downstream 163093 81486596 ~ 81506482 (+)
LOC118936817 NA coding downstream 179706 81503209 ~ 81504564 (+)
LOC110513527 LOC106595035 coding downstream 203011 81526514 ~ 81534991 (+)
LOC118936818 LOC106576580 coding downstream 235241 81558744 ~ 81615329 (+)
G928817 NA non-coding upstream 1571 81263256 ~ 81295061 (+)
G928706 LOC106591435 non-coding upstream 39542 81254642 ~ 81257090 (+)
G928810 NA non-coding upstream 47713 81248384 ~ 81248919 (+)
G928808 NA non-coding upstream 51918 81244121 ~ 81244714 (+)
G928840 NA non-coding downstream 30 81323533 ~ 81353606 (+)
G928841 NA non-coding downstream 5509 81329012 ~ 81426368 (+)
G928704 LOC106592660 non-coding downstream 16230 81339733 ~ 81436602 (+)
G928710 NA non-coding downstream 17345 81340848 ~ 81436999 (+)
G928846 NA non-coding downstream 37290 81360793 ~ 81363179 (+)
G928731 NA other upstream 175755 81119565 ~ 81120877 (+)
LOC110515606 LOC106597156 other upstream 465977 80723535 ~ 80922638 (+)
G928335 NA other upstream 980063 80311944 ~ 80316569 (+)
G928206 NA other upstream 1268413 80027002 ~ 80028219 (+)
G928765 NA other downstream 26033 81349536 ~ 81350331 (+)

Expression


Co-expression Network