G928840


Basic Information

Item Value
gene id G928840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81323533 ~ 81353606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057455
ACACTGTAGGAGAAACAGGTTATTGACTGACAAAGACCTAATAAAGCAGTCAACATTTAAACCATATTGTTGTGTTCTGGTGCACTATCCCAGTTCATTACTATCCTACCTACTGCATACAGAACAGAGTACAATTCATTACTAGAGACATACAGGTATTCTATCCTACCTACTGCGTACAGAACAGAGTACAATTTGTACTAGAGACATACAGGTATTCTATCCTACCTACTGCATACAGAACAGAGTACAATTCCAACAGGATATCAGAGATGCAGAAGAAGAGTATTCATGTGGTGATGATGTATGCTGTGTTGGAGTGCTCAGCCTGCTGAGTAAACTTCCCCTTAATTCTACCATcatgtcctcatgttactgaccctactacactacatacagtatgacaCAACCACTGCTCACACTATTAGGACATCTATTCTGACTTACTTCAGCTTCATCAGTTTAAATGTGGGATCCACCAGAGCAGCTGAAAGCAGTCCCCCTGCagagtctcctgggtgattgtagctcaggtccagctTTTTCAGGTgggaggggtttgacctcagagctgaagACAGAGCAGTAC

Function

NR:

description
PREDICTED: protein NLRC3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057455 True 589 lncRNA 0.43 2 81323533 81353606

Neighbor

gene id symbol gene type direction distance location
LOC118936811 LOC106593215 coding upstream 76182 81239097 ~ 81247351 (+)
LOC110530284 LOC106592313 coding upstream 103136 81217975 ~ 81220397 (+)
LOC110514786 LOC106592710 coding upstream 309282 80942545 ~ 81014251 (+)
LOC118936804 NA coding upstream 387472 80935213 ~ 80936319 (+)
trnae-cuc-165 NA coding upstream 393366 80930096 ~ 80930167 (+)
LOC110510686 LOC106597603 coding downstream 19977 81373583 ~ 81386366 (+)
LOC110518956 LOC106595358 coding downstream 132990 81486596 ~ 81506482 (+)
LOC118936817 NA coding downstream 149603 81503209 ~ 81504564 (+)
LOC110513527 LOC106595035 coding downstream 172908 81526514 ~ 81534991 (+)
LOC118936818 LOC106576580 coding downstream 205138 81558744 ~ 81615329 (+)
G928783 LOC106594467 non-coding upstream 30 81296632 ~ 81323503 (+)
G928826 NA non-coding upstream 6594 81289922 ~ 81316939 (+)
G928709 NA non-coding upstream 7054 81286535 ~ 81316479 (+)
G928705 LOC106594836 non-coding upstream 9785 81067884 ~ 81313748 (+)
G928707 NA non-coding upstream 13374 81281371 ~ 81310159 (+)
G928846 NA non-coding downstream 7187 81360793 ~ 81363179 (+)
G928853 NA non-coding downstream 38107 81391713 ~ 81393673 (+)
G928750 NA non-coding downstream 53117 81406723 ~ 81439976 (+)
G928784 NA non-coding downstream 55580 81409186 ~ 81445032 (+)
G928865 NA non-coding downstream 76723 81430329 ~ 81432413 (+)
G928731 NA other upstream 202656 81119565 ~ 81120877 (+)
LOC110515606 LOC106597156 other upstream 492878 80723535 ~ 80922638 (+)
G928335 NA other upstream 1006964 80311944 ~ 80316569 (+)
LOC118936819 LOC106602658 other downstream 282132 81617460 ~ 81672338 (+)

Expression


Co-expression Network