G928865


Basic Information

Item Value
gene id G928865
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81430329 ~ 81432413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1057509
CCATTCCTTTTCCTGtcatttattgaaaatgtatttgaCAGAGGTACTTCACATCAGTCATCATTTCTGTAAATGTGACagatttagccagctagctagtttaactGTAGTTCCTGGGCAGGTAGATCAACGTAGGTTGAACAGCTCCTTATATGTCATTCAGACACTCTCAAGTCATTGGTAAAGGAGTGACAGGTCACACAGCTCCTTATATGTCCTTCAGACACTCTCAAGTCATTGGTAAAGGAGTGACAGGTCACACATCTCCTTATATGTCCTTCAACCACTCAAGTCATTGGTAAAGGAGTGACAGGTCACACAGCTCCTTATATGTCCTTCAGACACTCTCAAGTCATTGGTAAAGGAGTGACAGGTTAACAGCTCCTTATATGTCCTTCAGACACTCTCAAGTCATTGGGAAAGGAGTGACAGGTTAACAGCTCCTTATTTGTCCTTCAACCACTCTCAAGTCATTGGTAAAGGGGTGACAGGTTACACAGCTCCGTATGTCTGTCAATGGTCAATGTGTTCCAGACGTGAGGCTCTCACTGAGAAAACTGCTGATAGACTGAGATGGTTGTGTTGATATTCAGCCTCTCTCATTAACCTCTAACAGGCCAACACTGTACAATATATTCATCAAATACATTTCTGTGGTTTTAAGTTGAATGCCAAATTCTCAgagccagtttcccagacacattcACAGTGAGTATGCAAATACAGTAAGTACATTccaataacatcacaatacatgtttacaatatatatacaatacATGTTTACAATCTCCtccaatagggtgtcatttcagatggTAGTCCTCgaccccctcatctcctccaataGGGTGTCAGTTCAGATGGTAATCCTagactcccctcatctcctccaatagggtgtcatttcagatggTAGTCCTagactctcctcatctcctccaatagggtgtcatttcagatggtaatcttagtctcccctcatctcctccaatagggtgtcatttcagatggAAGTTCGTTTTctaatactcatactaaccacactaaccgtactatttgtgacgtgatttgagtatatagtatgcttattggtcatagtatgatATAGTTTAGtttgccaaaagttcccggatctCGTACGTATTCGCCAAAATATTAAATTTACAAGCAGAGCACACTAATTCCGTACTttgggcccataatgcaattcttcatgAAGTGGGCGGGGCTTCACatcgttttcagatttgaagaaaatcgTGGAAAGTATGTTGCTGAAGTCCAACGACAGCGGATACAAATTAATTGCTTTAACAAATtttgacaaatgttaagaaaatgttgagcaatgtaagaaagtaattacttttcaaataagttaccttacacgtaGTGTTGGCTGATAATTTGctagctacgctgtccttacgaaccacacaGCATATCATTACATctgtatgtaccggtatgttagctacctACCTAACGCTACAGTAGTTGGCTACTTATACATCAAACGTGTCAGTATATTAACTACAGGCTAACTAACTActcaacgtttattgacttgattattcccgtcattcttagcttagctaaatggtatagtcgttgtgtTTTCGTAaattctctctgtttctactccgatttcagagcatcTCGCCTGAGagaccagagcgcagaataatgaatttacgagccgctcaacacccgttgaatatgaccagtgtcagtaaacatcggggggaaaaagcgtaattaaattgtttccagcagcaccagaaagctcaaatcaaccctactcctctgtCTGAGCGTCCAGATTTAATTTAATAACACACCCAAAGTCGAACAATGTCTAACTAGTAATTTgttacgctaactagctagcaagaggttgcatagcaacagcatcaacttccggtagagaAGGCAACGAGCTGGTCggttacagtatactaaaatgaactaatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1057509 True 1977 lncRNA 0.40 3 81430329 81432413

Neighbor

gene id symbol gene type direction distance location
LOC110510686 LOC106597603 coding upstream 43963 81373583 ~ 81386366 (+)
LOC118936811 LOC106593215 coding upstream 182978 81239097 ~ 81247351 (+)
LOC110530284 LOC106592313 coding upstream 209932 81217975 ~ 81220397 (+)
LOC110514786 LOC106592710 coding upstream 416078 80942545 ~ 81014251 (+)
LOC118936804 NA coding upstream 494268 80935213 ~ 80936319 (+)
LOC110518956 LOC106595358 coding downstream 54183 81486596 ~ 81506482 (+)
LOC118936817 NA coding downstream 70796 81503209 ~ 81504564 (+)
LOC110513527 LOC106595035 coding downstream 94101 81526514 ~ 81534991 (+)
LOC118936818 LOC106576580 coding downstream 126331 81558744 ~ 81615329 (+)
LOC118936819 LOC106602658 coding downstream 185047 81617460 ~ 81672338 (+)
G928841 NA non-coding upstream 3961 81329012 ~ 81426368 (+)
G928761 LOC106593214 non-coding upstream 11072 81269479 ~ 81419257 (+)
G928771 NA non-coding upstream 23046 81189415 ~ 81407283 (+)
G928853 NA non-coding upstream 36656 81391713 ~ 81393673 (+)
G928846 NA non-coding upstream 67150 81360793 ~ 81363179 (+)
G928868 NA non-coding downstream 20998 81453411 ~ 81453725 (+)
G928882 NA non-coding downstream 24139 81456552 ~ 81457073 (+)
G928883 NA non-coding downstream 25323 81457736 ~ 81457950 (+)
G928885 NA non-coding downstream 35317 81467730 ~ 81469858 (+)
G928886 NA non-coding downstream 36060 81468473 ~ 81469116 (+)
G928765 NA other upstream 79998 81349536 ~ 81350331 (+)
G928757 NA other upstream 99980 81277039 ~ 81330349 (+)
G928705 LOC106594836 other upstream 116581 81067884 ~ 81313748 (+)
G928929 NA other downstream 220978 81653391 ~ 81654391 (+)

Expression


Co-expression Network