G929867 (LOC106594399)


Basic Information

Item Value
gene id G929867
gene name LOC106594399
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81981150 ~ 81986601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1058945
cgaggcaggtagagagagagagcgagggaggtagagagagagagcgagggaggtagagagagagagcaagggaggtagagagagagcgagggaggtagagagagagcgagggaggtagagagagagccagggaggtagagagagagagcaagggaggtagagagagagcgagggaggtagagagagagccagggaggtagagagagccaggcaggtagagagagagcgaggcaggtagagagagagcgaggcaggtagagagagagcgaggcaggtagagagagagcgagggaggtagagagagagccagggaggtagagagagagccagggaggtagagcgagagcgagggaggtagatagagagccagggaggtagagagagagccagggaggtagagagagagccagggaggtagagggaggtagagagagagccggggaggtagagagagagccagggaggtagagagagagcgagggaggtagagagagagcgagggaggtagagagagagagagggaggtagagagagagaggtagagcgggtGTTTATCTCCTCACAGCCTTGTTGTCTGCCTGGCTGCTGTCGTATCCagtagtgagGTCTCGCACAGCGGTGATAGCGACGCCTCCACACTGCCTGGGGTACGACACATCCTCCTGGTTGCCGTAGTGACGCAGCCGGTCAAACATGGCCCGGATCACTTCCTGGTCGTGACAGATGAAGTAGGAGTTCTTAGTGATGTGGTACccatacctggaggagaggagaggggaga
>TU1058950
GTCAGCCTGGAACGCACCCAttctagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgagttcTAGAATTTGTGTGAGTTCTAGAATGTGTGTGAGTTCTGGAAGAAGAATGTGTGAAAGGGAATCTTGATCAGGAAGTCAAACCAGCGCAGGTCTTTGTGTTTACAAGCCACTGATGTGTGTTACTCAGGCTTGGACAGCAGGTTATTCTTCTGGGGCTGGAAGAAGTCCTCTACGATGGCATTAACCAGGTCATCTAACTCCTTCTGTAAACCTTTAACAtcaCTGTTGCCGGGGGCAGCACACAGCTCAGTGTAGTACTTGATCTTGGGTTCCGTTCCGCTGGTCCTCATGGTGGCCACGCCCCCGTTAGAGAAACTAAACGTGATCATCTGACtactgggggaggaggggaggacAGCCTTGTTGTCCGCCTGGCTGCTGTCGTATCCAGTAGTGAGGTCTCGCACAGCGGTGATAGCGACGCCTCCACACTGCCTGGGGTACGACACATCCTCCTGGTTGCCGTAGTGACGCAGCCGGTCAAACATGGCCCGGATCACTTCCTGGTCGTGACAGATGAAGTAGGAGTTCTTAGTGATGTGGTACccatacctggaggagaggagaggggaga
>TU1058951
agagagagagcgagcgagcgaggcagagagagagcgagggaggtagagagagagcaagggaggtagagagagagagagagcgagggaggtagagagagagggaggtagagagagagagggaggcagagagagagcgagggaggtagagagagagtgagggaggtagagagagagcgagggaggtagGGTGTTTATCTCCTCACAGCCTTGTTGTCCGCCTGGCTGCTGTCGTATCCAGTAGTGAGGTCTCGCACAGCGGTGATAGCGACGCCTCCACACTGCCTGGGGTACGACACATCCTCCTGGTTGCCGTAGTGACGCAGCCGGTCAAACATGGCCCGGATCACTTCCTGGTCGTGACAGATGAAGTAGGAGTTCTTAGTGATGTGGTACccatacctggaggagaggagaggggaga
>TU1058952
cgaggcaggtagagagagagagcgagggaggtagagagagagagcgagggaggtagagagagagagcaagggaggtagagagagagcgagggaggtagagagagagcgagggaggtagagagagagccagggaggtagagagagagagcaagggaggtagagagagagagcaagggaggtagagagagagcgagggaggtagagagagagccagggaggtagagagagccaggcaggtagagagagagcgaggcaggtagagagagagcgaggcaggtagagagagagcgaggcaggtagagagagagcgagggaggtagagagagagcgagggaggtagagagagagagagggaggtagagagagagaggtagagcgggtGTTTATCTCCTCACAGCCTTGTTGTCTGCCTGGCTGCTGTCGTATCCagtagtgagGTCTCGCACAGCGGTGATAGCGACGCCTCCACACTGCCTGGGGTACGACACATCCTCCTGGTTGCCGTAGTGACGCAGCCGGTCAAACATGGCCCGGATCACTTCCTGGTCGTGACAGATGAAGTAGGAGTTCTTAGTGATGTGGTACccatacctggaggagaggagaggggaga
>TU1058949
GTCAGCCTGGAACGCACCCAttctagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgagttcTAGAATTTGTGTGAGTTCTAGAATGTGTGTGAGTTCTGGAAGAAGAATGTGTGAAAGGGAATCTTGATCAGGAAGTCAAACCAGCGCAGGTCTTTGTGTTTACAAGCCACTGATGTGTGTTACTCAGGCTTGGACAGCAGGTTATTCTTCTGGGGCTGGAAGAAGTCCTCTACGATGGCATTAACCAGGTCATCTAACTCCTTCTGTAAACCTTTAACAtcactgacacacagagagagatggagcaggaggagagagatggaggaggagagagatggaagaggtgagagatggaggaggagagagatggaggaggagagagatggaggaggagagagatggagggaggagagagagatggaagaggtgagagatggaagaggtgagagatggaagaggagagagagagagag

Function

NR:

description
PREDICTED: phosphoglucomutase-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1058945 False 781 lncRNA 0.59 3 81981150 81982789
TU1058950 False 643 lncRNA 0.52 3 81981150 81986601
TU1058951 False 421 lncRNA 0.58 2 81981150 81981640
TU1058952 False 613 lncRNA 0.58 3 81981150 81982789
TU1058949 True 482 lncRNA 0.49 3 81986056 81986601
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Neighbor

gene id symbol gene type direction distance location
pax-5 pax-5 coding downstream 46940 81801697 ~ 81934210 (-)
LOC110511793 NA coding downstream 179493 81800264 ~ 81801657 (-)
LOC110516879 LOC106595306 coding downstream 268883 81682503 ~ 81712267 (-)
LOC110513528 LOC106592840 coding downstream 424390 81542030 ~ 81556760 (-)
LOC118936816 NA coding downstream 455752 81506173 ~ 81525398 (-)
LOC118936824 NA coding upstream 87851 82074452 ~ 82074728 (-)
trnap-agg-151 NA coding upstream 225206 82211807 ~ 82211878 (-)
LOC118936826 NA coding upstream 246470 82233071 ~ 82260736 (-)
LOC118936940 NA coding upstream 552317 82538918 ~ 82540157 (-)
LOC110515655 rfc1 coding upstream 640969 82627113 ~ 82698838 (-)
G929876 NA non-coding downstream 3007 81977903 ~ 81978143 (-)
G929866 NA non-coding downstream 37143 81943774 ~ 81944007 (-)
G929865 NA non-coding downstream 37686 81943262 ~ 81943464 (-)
G929863 NA non-coding downstream 41036 81939915 ~ 81940114 (-)
G929857 NA non-coding downstream 62880 81917965 ~ 81918270 (-)
G929880 NA non-coding upstream 10860 81997461 ~ 81998097 (-)
G929888 NA non-coding upstream 23973 82010574 ~ 82014402 (-)
G929893 NA non-coding upstream 34947 82021548 ~ 82025308 (-)
G929894 NA non-coding upstream 35915 82022516 ~ 82028323 (-)
G929904 NA non-coding upstream 60836 82047437 ~ 82049708 (-)
G929783 NA other downstream 341730 81637925 ~ 81639420 (-)
G929726 NA other downstream 591651 81388740 ~ 81389499 (-)
G929725 NA other downstream 600566 81379773 ~ 81380584 (-)
LOC110510685 LOC106590958 other downstream 661702 81312816 ~ 81329120 (-)
LOC118936810 LOC106596791 other downstream 687471 81285870 ~ 81294695 (-)
G929913 NA other upstream 93280 82079881 ~ 82082138 (-)
G929889 NA other upstream 121823 82108424 ~ 82109749 (-)
G929926 NA other upstream 131416 82118017 ~ 82118576 (-)
G929912 NA other upstream 133867 82120468 ~ 82120984 (-)
G929952 NA other upstream 204392 82190993 ~ 82196992 (-)

Expression

G929867(LOC106594399) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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G929867(LOC106594399) Expression in each Bioproject

Bar chart with 20 bars.
G929867(LOC106594399) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network