G929284 (rfc1)


Basic Information

Item Value
gene id G929284
gene name rfc1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82698511 ~ 82715829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1058138
CTAGACCTGGGCCTCATCAACAACAACTAGTCAACTAGTCAGACTACACACTAGCCCTGGGTACTGAGAAGgctggagggagagtagagagagagttttCCTCACAGTTTTCCTCTTGGTACTGGCCACCAGTTTCCTGTCCGAGCGCTGCACACTCCCACTGCCAAAGTAGTCCAGGACAGAGGTGGGGGTGCGTTTGGTCTGCGGGGGCGCTGATTTAGGGGTGACGGGGGCTGGAGGAGACTTCTTCATCCCTCCTTTCCCTGTGGCGGGAACAAGGGTGGGTTTCGGGGGGGACCTGTGGATCTCTTTGGTCCTGGGGCGGGCCTTCCTGGTTTGGGCACTCCATTACCCTGGGGCTTAGCCTGGGACTTCTTCAGAGACAGGAAGTTATCGCTGTCTGAATctgaCTCAATGACAGCACGCCTCTTTCTCTTTTTATCAttgtccttcttcttcttcttctccaccTTGGGGCTGGTGATCTTGGTGACAGGTTTCTTCTTCTTCACTTCTTCGTCTGTTGAGACGGattgcttcttcttcttcttcgtggaTTCCTTCTCTGTGTTCAGGGTTCCATCCTGAGATGGTTTCTGTGCTGTGGGTTTGCTTGATACAAAGAACCGCCTGATGTCCTTAGAAtggaaggggggagggagaggagagagtaaatgAGTCCACTGAGCCtaattgacaccctattccctatataatgcactacagggctctggttaaaagtaaatagtgcactgtataggaatACGGTGTAATTTGGGATCTATCCTAGACGTTAAATGACAGTTGATTTGAAGACATGCATTGCT

Function

symbol description
rfc1 Predicted to enable ATP binding activity; DNA binding activity; and DNA clamp loader activity. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Human ortholog(s) of this gene implicated in West Nile fever. Orthologous to human RFC1 (replication factor C subunit 1).

NR:

description
replication factor C subunit 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1058138 True 827 lncRNA 0.50 3 82698511 82715829

Neighbor

gene id symbol gene type direction distance location
LOC118936828 wdr19 coding upstream 297271 82316721 ~ 82401240 (+)
LOC118936827 LOC106591767 coding upstream 391786 82261288 ~ 82306725 (+)
LOC110510824 LOC106594418 coding upstream 465535 82212448 ~ 82232976 (+)
LOC118936825 LOC106593007 coding upstream 489177 82173331 ~ 82211022 (+)
LOC118936694 tbc1d1 coding upstream 577574 81997421 ~ 82120937 (+)
LOC110512972 lias coding downstream 11586 82727415 ~ 82738670 (+)
LOC118936830 NA coding downstream 25309 82740970 ~ 82780517 (+)
LOC118936832 LOC105009164 coding downstream 77824 82793509 ~ 82811450 (+)
LOC118936833 NA coding downstream 84090 82799919 ~ 82803172 (+)
LOC110512617 n4bp2 coding downstream 189901 82905730 ~ 82956331 (+)
G929282 rfc1 non-coding upstream 499 82697633 ~ 82698012 (+)
G929278 NA non-coding upstream 8533 82689742 ~ 82689978 (+)
G929277 NA non-coding upstream 8824 82689474 ~ 82689687 (+)
G929276 NA non-coding upstream 14147 82684141 ~ 82684364 (+)
G929274 NA non-coding upstream 15510 82681707 ~ 82683001 (+)
G929294 NA non-coding downstream 1979 82717808 ~ 82718305 (+)
G929257 rpl9 non-coding downstream 3690 82719519 ~ 82815785 (+)
G929258 NA non-coding downstream 22909 82738738 ~ 82739793 (+)
G929302 NA non-coding downstream 33059 82748888 ~ 82749196 (+)
G929159 NA other upstream 388939 82308803 ~ 82309572 (+)
G929305 NA other downstream 45776 82761605 ~ 82762488 (+)
G929370 NA other downstream 319283 83035112 ~ 83035491 (+)

Expression


Co-expression Network