G929328


Basic Information

Item Value
gene id G929328
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82856207 ~ 82857225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1058220
aacgtcaacagtgaagaggcgactctaggatgctggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatgctggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatgctctccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatactggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactctgggatgctggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatgctggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatgctctccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccaagatgctggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatactggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatgctggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggtgactccaggatgctggccttctaggcagagttcctctgtccagtctcaacatcaacagtgaagaggcgagtctgggatactggccttctaggcagagttcctctgtcaagtgtctgtgttcttttccc
>TU1058221
aacgtcaacagtgaagaggcgactctaggatgctggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatgctggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatgctctccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatactggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatgctctccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccaagatgctggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatactggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggagactccgggatgctggccttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggtgactccaggatgctggccttctaggcagagttcctctgtccagtctcaacatcaacagtgaagaggcgagtctgggatactggccttctaggcagagttcctctgtcaagtgtctgtgttcttttccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1058220 False 818 lncRNA 0.54 2 82856207 82857225
TU1058221 True 684 lncRNA 0.53 3 82856207 82857225

Neighbor

gene id symbol gene type direction distance location
LOC118936832 LOC105009164 coding upstream 44757 82793509 ~ 82811450 (+)
LOC118936833 NA coding upstream 53035 82799919 ~ 82803172 (+)
LOC118936830 NA coding upstream 113615 82740970 ~ 82780517 (+)
LOC110512972 lias coding upstream 117537 82727415 ~ 82738670 (+)
LOC118936828 wdr19 coding upstream 454967 82316721 ~ 82401240 (+)
LOC110512617 n4bp2 coding downstream 48505 82905730 ~ 82956331 (+)
LOC110515053 rhoh coding downstream 103846 82961071 ~ 82976330 (+)
LOC118936273 nachra9 coding downstream 133623 82990848 ~ 83014394 (+)
LOC118966663 NA coding downstream 164951 83022176 ~ 83102695 (+)
LOC110515357 LOC100196562 coding downstream 258231 83115455 ~ 83131029 (+)
G929323 LOC106592481 non-coding upstream 16019 82839699 ~ 82840188 (+)
G929257 rpl9 non-coding upstream 40422 82719519 ~ 82815785 (+)
G929316 NA non-coding upstream 42579 82813204 ~ 82813628 (+)
G929267 NA non-coding upstream 80517 82774328 ~ 82775690 (+)
G929341 NA non-coding downstream 27515 82884740 ~ 82887716 (+)
G929346 NA non-coding downstream 94865 82952090 ~ 82952710 (+)
G929353 NA non-coding downstream 122347 82979572 ~ 82980453 (+)
G929355 NA non-coding downstream 127586 82984811 ~ 82985911 (+)
G929360 NA non-coding downstream 146773 83003998 ~ 83004589 (+)
G929305 NA other upstream 93719 82761605 ~ 82762488 (+)
G929159 NA other upstream 546635 82308803 ~ 82309572 (+)
LOC118936827 LOC106591767 other upstream 551925 82261288 ~ 82306725 (+)
G929370 NA other downstream 177887 83035112 ~ 83035491 (+)
LOC110512947 NA other downstream 729363 83586588 ~ 83639961 (+)
LOC110518749 LOC106592297 other downstream 1036369 83893530 ~ 83968790 (+)
LOC110516172 htt other downstream 1137448 83981478 ~ 84112196 (+)

Expression


Co-expression Network