G930333


Basic Information

Item Value
gene id G930333
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83573263 ~ 83573958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1059621
TGGTTAGTTAAGGTCATCTCTATAATAATGGTCCCTCACCTGTATTTGGCCGGGGTTCCAGGGGAACAGGTACAGGCGAGAAATTAATGTTTCCCCTTTCACTGTCAGATAGAGAATCAGCTCACAGTGGACATCTACGTTCCAAGACAGTAATCTCAGTATCAGAGCGATAGGTGAGAACTTGGGATGGAGAATCTTAACATGGAATCTGGTGACCTCATGCACTTCCTCTAAAGACACTCCATGTTCCTCTGCATGAAGAATCTTCATCTCATTCCTCAGGGAAGGGTTGGTCCctgaaCTAAACAGACAAAGTGTGGCAGATGAACTTCCTCCAGTTCACCTAACTCCATAGTGATGTCCAGCAATGGACCACCTTGTGCGTACTGCATGTCTTTCAGAAGTTGACTGTAGGGTTCCCAGTTCCTGAAGTGATACTTCAGAAtgacatctctctcacacagccaGCGGAGCCCAGACACTGTGCACTCATAACTCCCTCTGGGTGTCCTGTG

Function

NR:

description
PREDICTED: caspase recruitment domain-containing protein 8-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1059621 True 515 lncRNA 0.47 2 83573263 83573958

Neighbor

gene id symbol gene type direction distance location
LOC110512943 LOC106602128 coding upstream 10276 83560090 ~ 83562987 (+)
LOC118936837 LOC106592595 coding upstream 15864 83540003 ~ 83557399 (+)
LOC118936836 NA coding upstream 429735 83139955 ~ 83143528 (+)
LOC110515357 LOC100196562 coding upstream 442234 83115455 ~ 83131029 (+)
LOC118966663 NA coding upstream 470568 83022176 ~ 83102695 (+)
LOC110512947 NA coding downstream 59604 83586588 ~ 83639961 (+)
LOC118937117 NA coding downstream 170715 83744673 ~ 83744836 (+)
LOC118937030 NA coding downstream 172701 83746659 ~ 83746784 (+)
LOC118937033 NA coding downstream 174695 83748653 ~ 83748778 (+)
LOC118936990 NA coding downstream 176689 83750647 ~ 83750810 (+)
G930332 NA non-coding upstream 1824 83570686 ~ 83571439 (+)
G930321 NA non-coding upstream 26638 83542199 ~ 83546625 (+)
G930325 NA non-coding upstream 41673 83529426 ~ 83531590 (+)
G930327 NA non-coding upstream 42783 83526324 ~ 83530480 (+)
G930344 NA non-coding downstream 21274 83595232 ~ 83602052 (+)
G930317 NA non-coding downstream 42172 83616130 ~ 83617088 (+)
G930315 NA non-coding downstream 43315 83617273 ~ 83684302 (+)
G930352 NA non-coding downstream 50022 83623980 ~ 83625115 (+)
G929370 NA other upstream 537772 83035112 ~ 83035491 (+)
LOC110512617 n4bp2 other upstream 616932 82905730 ~ 82956331 (+)
LOC118936832 LOC105009164 other upstream 774941 82793509 ~ 82811450 (+)
G929305 NA other upstream 810775 82761605 ~ 82762488 (+)
LOC118936830 NA other upstream 830483 82740970 ~ 82780517 (+)
LOC110518749 LOC106592297 other downstream 319636 83893530 ~ 83968790 (+)
LOC110516172 htt other downstream 420715 83981478 ~ 84112196 (+)
LOC110515513 LOC106594142 other downstream 562615 84130437 ~ 84282587 (+)
G930572 LOC106593948 other downstream 580981 84154939 ~ 84155714 (+)

Expression


Co-expression Network