G930313


Basic Information

Item Value
gene id G930313
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83678414 ~ 83682799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1059597
GTTCAATCTGAAGCCAGTGTGTGGAGTCCTGAACAAGGACAAGCATGTCAGTAATACATATGGGGcctgtttcctggacacagattgaGTCTAGTGCTGGACTTAAAGCATGCCCAATGAAAGTTTCAATAGAAAGTTCTTTAAGGTCCAGGActagacttaatctgtgtctgggaaactggcccattAACCAAAGTAACTAATTTAACGTATTTATCCAATTAAACTGTTGAATGACAAAATATGACAACAGCTAAAATCCTGCATGCCTAAAAGCAGAACACAGGAGTCTATATACCAGTTTGAATGGTTGGTCAGTACACACCTGGCTTTGAgactgtgtttatattactaaagcagaacacaggactgtctatatcccaggatgaatggttggtcagtacacacctggctttgagactgtgtttatattactaaagcagaacacaggactgtctatatcccagcatgaatggttggtcagtacacacctggctttgagactgtgtttatattactaaagcagaacacaggactgtctatatcccagtatgaatggttggtcagtacacacctggctttgagactgtgtttatattactaaagcagaacacaggactgtctatatcccagtatgaatggttggtcagtacacacctggctttgagactgtgtttatattactaaagcagaacacaggactgtctatatcccagtatgaatggttggtcactacacacctggctttgagactgtgtttatattactaaagcAGAACACAGGACTGTCTATATCCCAGTATGAATAGTTGGTCAGTACACACCTGGCGTTGAGACTGTGCCGGACTCCTGCAGGTATGTAAAAGTAAGAATTTACATTATGACTTACCTCAACATGGTCACAAGTCTTACAGCTCTGAGGAATCCCTGAAGTCAAAAGTAGTTGTTATTTAAAATGGACAATCTCATGTAATAATGAATTAATCATTATTAAATAGACTTGTAATATAACTAAGCAACAGTCTCAGAATGTACACTCATTAGCATACCATAATCTGACATTAGCGTTATATTAATTAATGTTTGTAGAAGCAGGAAACAACATCATTCTGGTCCATGTTTTGTAGATGTTGGGGGCCTGATTTCTGGTAGATTCTAGGATGAGAGTTTAAAGGTAGAGTCAGATAAATGTATGTTGTACGAGCAGCACCACCGATATTGTGATGAGCAAGATGCCCgacttctctctcacacagtcacaaacaGTATCTGCCCATCTTCACTCTCTTACAGAATGTTAGTCACGGGACCAAAACAGCGGAGAAGTTTAGCCTTGCTCTCCAACACTCTTAGTTGTTGtagaaattgacccactatgctgtttactttgtgcATCTACGTCATATCGCTGACTCTACCTTTAAGTTTGTTTTGACAAAATAGATCATGATTGTGCTCCTTGTCTGGGACTCAAGTATAATGAATGCTTTAAAACTACTTTGACTTAAAAACAATTATCAGTTAACTCACatttctggggcggcagggtagcctagtagttagaacattggactagtaaccggaaggttgcaagatcaaatccccgagctgacaaggtacaaaatctgtcattctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgtctagttaaataaaggtaaaaaataaatgtaaaaaaccctcacatttctcaggtccaggcttgatccaactctctccaccatggtctctggtgtcctcaggtccaggcttgatccaactctctccaccatggtctctggtgttctcaggtccaggcttgatacaactctctccaccatggtctctggtgtcctcaggtccaggcttgatacaactctctccaccatggtctctggtgttccaacagaacacattaaaacacaccactactactaatctaactgtctgtaggtccaacagaacccattaaaacacaccactactactaatctaactgtctgtaggtccaacagaacacattaaaacacaccactactactaatctaactCTGCCACTAGCTCTGCCACCTGTCACCATTACTACTAATCTAactactactaatctaactgactagctctgccacctttcaccattACTACTAATCTAACCACCATTACTACTAATCTAACTACTACTAATCTAactactactaatctaactgACTAGCTCTGCCACCTGCCACCATTACTACTAATCTAACTGATTAGCTCTGCCACCATTACTACTAATCTAactactactaatctaactgACTAGCTCTGCCACCATTACTACTAATCTAactactactaatctaactgACTAGCTCTGCCACCATTACTACTAATCTAactactactaatctaactgACTAGCTCTGTCACCATTACTACTAATCTAACTACTACTAATCTAACTACTACTAACCTAACTGATTAGCtctgccaccactactactaatctaactgactagctctgtcacctgtcaccactactactaatctaactgATTAGCTCTGCCACCATTACTACTAATCTAACTGACTAGCtctgccaccactactactaatctaacttactagctctgtcacctgtcaccactactactaatctaactactactaatctaactgACTAGCtctgtcatcactactactaatctaactgACTAGCtctgccaccactactactaatctaactgACTAGCTCTGCCACCATTAATACTAATCTAACCACTACTAATCTAactactactaatctaactgACTAGCTCTGCCACCATTACTACTAATCTAactactactaatctaactgACTAGCTCTGTCACCATTACTACTAATCTAACTGACTAGCTCTGCCACCTGCCACCATTACTACTAATCTAactactactaatctaactgACTAGTTCTGCCACCTGCCACCATTACTACTAATCTAACTACTACTAATCTAactactactaatctaactgACTAGCTCTGCCACCTGCCACCATTACTACTAATCTAACTACTACTAATCTAactactactaatctaactgACTAGCTCTGCCACCTGCCACCATTACTACTAATCTAactactactaatctaactgactagctctgccacctttcaccgtgGATTGAAACACAGAAGCCAAGCCAcaccactgcttcttgacacactgcctgCTTAACCAGGCAGCCAGCTGCACCAATTTGTCGGAGGAAAGTccggccgccacaaggagtcgctagagcgtgatgggatAAGGACGTCCCAGTCAGCCAAACCCTCCAGACAGCGCTGGGACAATTGcggccgcctcatgggtctcctggtgcGTCCGGCTTCggcacagcccgggatcgaacccggatctgtagtgaagcctcaagCACTCGGGAGCCCGATGGGGATTCttttatgttacttagattgacacacCAATCGATCTCAGAGGGCTACTAAAACACTACTACTAATGTAATTGTAGGAATGACTCCAGAGGAAAACACAATGAGGAAACATCGCTATTTGACTCACCTCTGAATGTGTTGGTCATCTATCTGACACAGGGTCACTGAGAAGGCGGAGTAAATCCCAAACCCAGGATAGAGGGGTTCAGTGAAcgtggtgtgttctgtgtgaaGGTGTGTCAGTGTACCAGAGGAGGACACGCTATAGAAGGTCAAAGTACCAgctggccagtccagatacactccaACTCTGTTAGAAACATGACGAGGGATGGATCTGCTGACTCCATCATGTTTAAATAAATAACCTTTGTCAAAGCAGACTAAACACCAAGACTTCCTATTGTCTCCAATCCTACGGtcactccccctttccttccTCTTCAGTCCTTTGTACACCACACCAATGTCCGCCATGCCaccacccctctccacctcccagtaATAACGACACCCAGATAAGCCTTCTCTGCAGAGAACTTGATAAAGACAGTCAAATCTGTCTGGATGGTCTTCATAATGCTGGTCCTCCACCACCCGTTTCAACTTCCTGTTCCCCTCAGACAGTATCAGGTGGGGGTTTGCTGTATTTGGGTCCAGGGTGAGATGACAGG

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1059597 True 4146 lncRNA 0.42 2 83678414 83682799

Neighbor

gene id symbol gene type direction distance location
LOC110512947 NA coding upstream 41674 83586588 ~ 83639961 (+)
LOC110512943 LOC106602128 coding upstream 115427 83560090 ~ 83562987 (+)
LOC118936837 LOC106592595 coding upstream 121015 83540003 ~ 83557399 (+)
LOC118936836 NA coding upstream 534886 83139955 ~ 83143528 (+)
LOC110515357 LOC100196562 coding upstream 547385 83115455 ~ 83131029 (+)
LOC118937117 NA coding downstream 61874 83744673 ~ 83744836 (+)
LOC118937030 NA coding downstream 63860 83746659 ~ 83746784 (+)
LOC118937033 NA coding downstream 65854 83748653 ~ 83748778 (+)
LOC118936990 NA coding downstream 67848 83750647 ~ 83750810 (+)
LOC118937031 NA coding downstream 69867 83752666 ~ 83752791 (+)
G930357 NA non-coding upstream 8021 83668635 ~ 83670393 (+)
G930339 NA non-coding upstream 13168 83664353 ~ 83665246 (+)
G930352 NA non-coding upstream 53299 83623980 ~ 83625115 (+)
G930317 NA non-coding upstream 61326 83616130 ~ 83617088 (+)
G930350 LOC106593304 non-coding downstream 7491 83690290 ~ 83723048 (+)
G930374 NA non-coding downstream 10591 83693390 ~ 83697156 (+)
G930377 NA non-coding downstream 17888 83700687 ~ 83701625 (+)
G930384 NA non-coding downstream 42279 83725078 ~ 83725298 (+)
G930459 NA non-coding downstream 56371 83739170 ~ 83739393 (+)
G929370 NA other upstream 642923 83035112 ~ 83035491 (+)
LOC110512617 n4bp2 other upstream 722083 82905730 ~ 82956331 (+)
LOC118936832 LOC105009164 other upstream 880092 82793509 ~ 82811450 (+)
G929305 NA other upstream 915926 82761605 ~ 82762488 (+)
LOC110518749 LOC106592297 other downstream 210795 83893530 ~ 83968790 (+)
LOC110516172 htt other downstream 311874 83981478 ~ 84112196 (+)
LOC110515513 LOC106594142 other downstream 453774 84130437 ~ 84282587 (+)
G930572 LOC106593948 other downstream 472140 84154939 ~ 84155714 (+)
G931108 LOC107756720 other downstream 993760 84676559 ~ 84677078 (+)

Expression


Co-expression Network