G930465


Basic Information

Item Value
gene id G930465
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83744681 ~ 83756670 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1059805
ctggcaagggagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctgatcttgatgttaaaaataatttaGGGACATATTTAATTCCATGTGTTTTAACTCGCTCttctattgagtttcgtgttgagaaggacatttgtcaacatttgcatgttcttatcagatgaatggctatagaatgtagggtctgtttatgagtcaactaaggcctcagagatacattttgtcttctgataacccggatgtgtgtgatatgttattgtagcactggtgattatgcctgtcatgtcctgataatgtcaaggaaaaggcctacttgtgaatggatcattttgtgccctcatgACGTATTCTGGATTGAGGTCTTTCATTTGCTAGAATATTAAATAATTTATAGGAGAGTTTGTAATTTAAGACCACAACCATTACAATGCCACAGAAATTTCCCTGGTCAACTATtaccatgaaaacagacatttccctggtcaaccattaccatgacaacagacatttccctggtcaaccattaccatgccacagtcatgtccctggtcaaacattaccattccacagacatttccctggtcaaccattaccttgacaacagacatgtccctggtctacaatgccacagacatttccctggtcaaccattaccatgccacagacatgtccctggtccacttctttcctgatgaaatcagtcaataagatggattctgttgttccaagatgcagatccattccacagacatttctgcaggttttttttttgcagtgagaatgtgtagtgaggtattctgccaaaaatgtatttaggcatattaaaacacttcagtttaaccctgatcgcgagtatcatcctgtcaatttacagatacaattacaaatacgagtatggccatgtcactgtacatagatctttctattttcatgttctactgtgttattgactacgtttgtttacgtgtaactctgtgttgttgtttttgtcgcactgctgtgctttatcttggccaggtcgcagtttgtaaatgagaacttgttcctaactagcctacctggtgaaataaaacaattaattaaaaaccacccattgtagctactaccgtgtcttgttgatgaagtagtaggctactgtttctcctccatatctgtgggtcgtatgccaccctgtggtcgatggtggaatcatattttactgagagcagaaaacaagcgtgatgaaactattcctacaacgtctggaacgctac
>TU1059807
ctggcaagggagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggaaccgtgatcacgaaggcgtttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccc

Function

NR:

description
PREDICTED: calcium-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1059805 False 1364 lncRNA 0.41 3 83744681 83748307
TU1059807 True 275 lncRNA 0.56 2 83744681 83756670

Neighbor

gene id symbol gene type direction distance location
LOC110512947 NA coding upstream 107941 83586588 ~ 83639961 (+)
LOC110512943 LOC106602128 coding upstream 181694 83560090 ~ 83562987 (+)
LOC118936837 LOC106592595 coding upstream 187282 83540003 ~ 83557399 (+)
LOC118936836 NA coding upstream 601153 83139955 ~ 83143528 (+)
LOC110515357 LOC100196562 coding upstream 613652 83115455 ~ 83131029 (+)
LOC118937015 NA coding downstream 1774 83758444 ~ 83758590 (+)
LOC118937044 NA coding downstream 3692 83760362 ~ 83760473 (+)
LOC118937021 NA coding downstream 5665 83762335 ~ 83762474 (+)
LOC118937025 NA coding downstream 7768 83764438 ~ 83764589 (+)
LOC118937022 NA coding downstream 9777 83766447 ~ 83766586 (+)
G930461 NA non-coding upstream 4767 83739627 ~ 83739914 (+)
G930459 NA non-coding upstream 5288 83739170 ~ 83739393 (+)
G930384 NA non-coding upstream 19383 83725078 ~ 83725298 (+)
G930350 LOC106593304 non-coding upstream 21633 83690290 ~ 83723048 (+)
G930466 NA non-coding downstream 61458 83818128 ~ 83830444 (+)
G930485 NA non-coding downstream 87117 83843787 ~ 83844002 (+)
G930486 NA non-coding downstream 87857 83844527 ~ 83848499 (+)
G930487 NA non-coding downstream 92174 83848844 ~ 83849076 (+)
G930498 NA non-coding downstream 113512 83870182 ~ 84086362 (+)
G929370 NA other upstream 709190 83035112 ~ 83035491 (+)
LOC110512617 n4bp2 other upstream 788350 82905730 ~ 82956331 (+)
LOC118936832 LOC105009164 other upstream 946359 82793509 ~ 82811450 (+)
G929305 NA other upstream 982193 82761605 ~ 82762488 (+)
LOC110518749 LOC106592297 other downstream 136924 83893530 ~ 83968790 (+)
LOC110516172 htt other downstream 238003 83981478 ~ 84112196 (+)
LOC110515513 LOC106594142 other downstream 379903 84130437 ~ 84282587 (+)
G930572 LOC106593948 other downstream 398269 84154939 ~ 84155714 (+)
G931108 LOC107756720 other downstream 919889 84676559 ~ 84677078 (+)

Expression


Co-expression Network