G930522


Basic Information

Item Value
gene id G930522
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 83910549 ~ 83917867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1059914
ttcaataggactctagtgcactactttagaccaggttcaataggactctagtgcactactttagaccaggttcaataggactctagtgcactactttagaccaggttcaataggactctagtgcactactttagaccagattcaataggactctagtgcactactttagaccagattcaataggactctagtgcactactttagaccaggttcaataggactctagtgcactactttagaccagattcaataggactctagtgcactactttagaccagattcaATAGGACTCTAGTGAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGAT
>TU1059913
tggactctagtgcactactttagaccaggttcaataggactctagtgcactactttagaccagattcaataggactctagtgcactactttagaccaggttcaataggactctagtgcactactttagaccagattcaataggactctagtgcactactttagaccagattcaATAGGACTCTAGTGAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGAT
>TU1059918
tcaataggactctagtgcactactttagaccagattcaataggactctagtgcactactttagaccagattcaATAGGACTCTAGTGAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGAT
>TU1059911
cactactttagaccaggttcaataggactctagtgcactactttagaccaggttcaataggactctagtgcactactttagaccagattcaATAGGACTCTAGTGAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGATAATAACAACAGGATCAATATCATGTCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1059914 False 478 lncRNA 0.37 2 83910549 83912042
TU1059913 False 367 lncRNA 0.36 3 83911361 83917867
TU1059918 False 267 lncRNA 0.33 2 83917076 83917867
TU1059911 True 285 lncRNA 0.34 2 83917303 83917867

Neighbor

gene id symbol gene type direction distance location
LOC118937032 NA coding upstream 74290 83836116 ~ 83836259 (+)
LOC118936954 NA coding upstream 77298 83833088 ~ 83833251 (+)
LOC118936944 NA coding upstream 79250 83831136 ~ 83831299 (+)
LOC118936943 NA coding upstream 81202 83829184 ~ 83829347 (+)
LOC118936958 NA coding upstream 83236 83827150 ~ 83827313 (+)
LOC118936843 NA coding downstream 32981 83950848 ~ 83953723 (+)
LOC110516172 htt coding downstream 63611 83981478 ~ 84112196 (+)
LOC118937093 NA coding downstream 131862 84049729 ~ 84049858 (+)
LOC118936845 NA coding downstream 197950 84115817 ~ 84118470 (+)
LOC110515513 LOC106594142 coding downstream 212570 84130437 ~ 84282587 (+)
G930501 NA non-coding upstream 29154 83880147 ~ 83881395 (+)
G930487 NA non-coding upstream 61473 83848844 ~ 83849076 (+)
G930486 NA non-coding upstream 62050 83844527 ~ 83848499 (+)
G930485 NA non-coding upstream 66547 83843787 ~ 83844002 (+)
G930466 NA non-coding upstream 80105 83818128 ~ 83830444 (+)
G930527 NA non-coding downstream 4901 83922768 ~ 83923965 (+)
G930528 NA non-coding downstream 6570 83924437 ~ 83945088 (+)
G930536 NA non-coding downstream 68184 83986051 ~ 83987850 (+)
G930543 NA non-coding downstream 107261 84025128 ~ 84028419 (+)
G930550 NA non-coding downstream 148689 84066556 ~ 84068955 (+)
LOC110512947 NA other upstream 270588 83586588 ~ 83639961 (+)
G929370 NA other upstream 875058 83035112 ~ 83035491 (+)
LOC110512617 n4bp2 other upstream 954218 82905730 ~ 82956331 (+)
LOC118936832 LOC105009164 other upstream 1112227 82793509 ~ 82811450 (+)
G929305 NA other upstream 1148061 82761605 ~ 82762488 (+)
G930572 LOC106593948 other downstream 237072 84154939 ~ 84155714 (+)
G931108 LOC107756720 other downstream 758692 84676559 ~ 84677078 (+)
LOC110517086 LOC106590778 other downstream 1225453 85105137 ~ 85149776 (+)

Expression


Co-expression Network