XLOC_002828


Basic Information

Item Value
gene id XLOC_002828
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28382085 ~ 28385569 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006072
cagcgccgtagcctacgccggtgtttgacgcagaagtataaatcagccttaagcgaTAGGTTTTTAAGATTCAGACTGTCTTCGTCAGATTGGTTGAGTTTGTTTCTTACTTGACTTACATAAAATAAAAGCTCCTCCTCAGAGAATCATCACTTCTTCTTTCGCACCATCGAGAAGGTTGAACCATTCATAAGATTTACAAAAGGAGGAACTTTCTGACATTTGAAATGATGTTATCAGTGAGAATCTTTGTGACTGCATGCGAGTGGATGCTCCTGGCTTTGTTTTCTGCTGTTGTAGCTGGATATACATCTTTAACCAACACATCAGTTCAAACTGTTCATCGAGGAGCGTCAGTCAATATTAGCTGTAGATACAAACCATCAGATGAAACTGTCGCTTTTGATGTGAAActagaaaacaaatatagctatTATACATTGTGCTCAGTAAAGATTATGAACAATTCATTGATTAGTCAATCTTACCAGAACCATTCCACCTCCTTCAGTTGTTTTGCGAGAAGACAGAACATTTGTTCAAGTGATTGCTCGCCCCACTGTGTCTGTATCACAAACAAGAGCATTGGATGGATTTACAATCCTTTGCAGCTCTGAAGAGTTTTATCCTTCAGCTATAGAACAGGTGTGGATGAGAAATGGAGAATTTCAGAACATTTCTCAGACACTAAACATTAACAAAACCAACCCAGATGGATCCTTCACTCTCCATTCATATCTGAATACATCTGACTGTGAAAACTACTCGTGTTGGGTGAACCACTCGACCTTAAGCCAACCAACAACTCTTCATGTGCTCCCTAATTACTGTAACAAGGACCGAGGTATCACCTATTTTGTGTTTGTAATTGATGTTACATAGCAGTCTCATAATAGTAATAGATCCCACACATTCTGAAAATGCTGCATTTTTTAAGCCAATTTAAGTAAGATATTAAACCTAAAAATAGGATTAAATTTGGcattataactttattttaacaaataaaaaatcccTAGCTTTTTTAAAGTGTAGCATGTTTGAAATGCAATAATTGTGCTTGTTTATTCTgctttaataactgtttttaataCTGCAGGTGTATGGATAGCTGTGAAGACTTCTGCATTGCTGATTATTGTCATAATACTCATTATTGCAGTCTTCTGTGCACATTACAGGTCGCGCAATCTTCAAAGTCAAAATGTTCAGAATTACACAAATCAAGTTGTCATGTTCATCCAGTAAGAGCCTATCACAGGTTCTCCTGTCCAATCTGACACCCCCATCACTGCATAATCACGATCCAGTCCCATGCAGCCTGGTCAGACTCCACGCATGACCACATGAAGCTTTTTCACTATGATTGATGTTGTCTGATTCATTCACTAACCCTAACTTGTTTGTGTATAGTAATACAGAGTTTCATGCAACAATTCATACtggttcttgattctgattggctgagaggtCTTTATCTCCATGTGATCTTCCTGTAGGCTATTATTACAGTAAACTCTTTACAGAATTTCGAACATGAAGAGTCGTGTCAAAGGACCAAAGCCactataaatgtacaaatattactgttgttgtgtcactgaatgtattttaaagagGTTAGAATGTAGTTGTAGATGTATGGCATGTGAACGCAAGGTATCTGTGTTTCAGCACTTATGAAACCAAAGACAGCTTTACTTTGGCCAGTTCTTCTGGAATCAACTGCTGGCGATGTATGTAAAGtggtaaaatataataattaattgtaaGTAATAAGGAGCCATCTTTGGTATCTTTAATCTGTTATTTGTTCCAGAGCAAACTGTTTTTAGGTAACGTTTCTTAACTTTTATCTGCCTTTACTTAACACTTATTAACACTGTCATTGTGCTTTTGATAAATAACATTTGTAATGTGTGTTGTTGTATATGAGCAAGAGAATCtaatttttatgcaatattaatGTTCAGTAAAACATGCTGCctatattaaaaatcatttatatGGTATTAATAAACAGTGTGCGCTGTTGGTAATTTGCAGTTCTGGTTGCATTGTTATTTCAATAGAATTGCACAGGAGACTTTACTTTTGTGACTTTTAAAGtggctttttttgttatttttgaattTAGATAGATCACCTGAAAGCTGGATAGACAAGACTTTAATTGTTGTATTGAAACCACCGTGCATATTTTCTACAATTGCATCTACTCAGAGTTATTTTGGTCTCATATACATGACAGATTTCTCATGTCAATATCTATGTAAACCCTTTTTGCTGTAAACGATTTAAATTTGGTGTAACTAAAGAAAATTGTACTCAGCATTAcctagttaataatattttattctttgtAAAAATTTATCAATAACCCCCTCacccccctcacacacacacacacacacacacacacacacacacacacacacacacattttacactATATTAATAAACTTGCTTCATCACTTAGTACTTTGTCAAATGATAAAGTAACTTAATTTTGTACCCTATAGCCCCTTCACAACCCTTTGAAGGGTTATATTGTGTAaacttttataatttattttatttaattattattattttatttatttattaactttttttacatCAG
>TCONS_00006071
cagcgccgtagcctacgccggtgtttgacgcagaagtataaatcagccttaagcgaTAGGTTTTTAAGATTCAGACTGTCTTCGTCAGATTGGTTGAGTTTGTTTCTTACTTGACTTACATAAAATAAAAGCTCCTCCTCAGAGAATCATCACTTCTTCTTTCGCACCATCGAGAAGGTTGAACCATTCATAAGATTTACAAAAGGAGGAACTTTCTGACATTTGAAATGATGTTATCAGTGAGAATCTTTGTGACTGCATGCGAGTGGATGCTCCTGGCTTTGTTTTCTGGTAACGATTATGCAGTTCTGTTTAATCTTCGTACTGTTATTCAACATTAAACATACTTATTTCTTTAATATGCCTGCTTTTTTTAGCTGTTGTAGCTGGATATACATCTTTAACCAACACATCAGTTCAAACTGTTCATCGAGGAGCGTCAGTCAATATTAGCTGTAGATACAAACCATCAGATGAAACTGTCGCTTTTGATGTGAAActagaaaacaaatatagctatTATACATTGTGCTCAGTAAAGATTATGAACAATTCATTGATTAGTCAATCTTACCAGAACCATTCCACCTCCTTCAGTTGTTTTGCGAGAAGACAGAACATTTGTTCAAGTGATTGCTCGCCCCACTGTGTCTGTATCACAAACAAGAGCATTGGATGGATTTACAATCCTTTGCAGCTCTGAAGAGTTTTATCCTTCAGCTATAGAACAGGTGTGGATGAGAAATGGAGAATTTCAGAACATTTCTCAGACACTAAACATTAACAAAACCAACCCAGATGGATCCTTCACTCTCCATTCATATCTGAATACATCTGACTGTGAAAACTACTCGTGTTGGGTGAACCACTCGACCTTAAGCCAACCAACAACTCTTCATGTGCTCCCTAATTACTGTAACAAGGACCGAGGTGTATGGATAGCTGTGAAGACTTCTGCATTGCTGATTATTGTCATAATACTCATTATTGCAGTCTTCTGTGCACATTACAGGTCGCGCAATCTTCAAAGTCAAAATGTTCAGAATTACACAAATCAAGTTGTCATGTTCATCCAGTAAGAGCCTATCACAGGTTCTCCTGTCCAATCTGACACCCCCATCACTGCATAATCACGATCCAGTCCCATGCAGCCTGGTCAGACTCCACGCATGACCACATGAAGCTTTTTCACTATGATTGATGTTGTCTGATTCATTCACTAACCCTAACTTGTTTGTGTATAGTAATACAGAGTTTCATGCAACAATTCATACtggttcttgattctgattggctgagaggtCTTTATCTCCATGTGATCTTCCTGTAGGCTATTATTACAGTAAACTCTTTACAGAATTTCGAACATGAAGAGTCGTGTCAAAGGACCAAAGCCactataaatgtacaaatattactgttgttgtgtcactgaatgtattttaaagagGTTAGAATGTAGTTGTAGATGTATGGCATGTGAACGCAAGGTATCTGTGTTTCAGCACTTATGAAACCAAAGACAGCTTTACTTTGGCCAGTTCTTCTGGAATCAACTGCTGGCGATGTATGTAAAGtggtaaaatataataattaattgtaaGTAATAAGGAGCCATCTTTGGTATCTTTAATCTGTTATTTGTTCCAGAGCAAACTGTTTTTAGGTAACGTTTCTTAACTTTTATCTGCCTTTACTTAACACTTATTAACACTGTCATTGTGCTTTTGATAAATAACATTTGTAATGTGTGTTGTTGTATATGAGCAAGAGAATCtaatttttatgcaatattaatGTTCAGTAAAACATGCTGCctatattaaaaatcatttatatGGTATTAATAAACAGTGTGCGCTGTTGGTAATTTGCAGTTCTGGTTGCATTGTTATTTCAATAGAATTGCACAGGAGACTTTACTTTTGTGACTTTTAAAGtggctttttttgttatttttgaattTAGATAGATCACCTGAAAGCTGGATAGACAAGACTTTAATTGTTGTATTGAAACCACCGTGCATATTTTCTACAATTGCATCTACTCAGAGTTATTTTGGTCTCATATACATGACAGATTTCTCATGTCAATATCTATGTAAACCCTTTTTGCTGTAAACGATTTAAATTTGGTGTAACTAAAGAAAATTGTACTCAGCATTAcctagttaataatattttattctttgtAAAAATTTATCAATAACCCCCTCacccccctcacacacacacacacacacacacacacacacacacacacacacacacattttacactATATTAATAAACTTGCTTCATCACTTAGTACTTTGTCAAATGATAAAGTAACTTAATTTTGTACCCTATAGCCCCTTCACAACCCTTTGAAGGGTTATATTGTGTAaacttttataatttattttatttaattattattattttatttatttattaactttttttacatCAG
>TCONS_00006073
cgaagggctatgcgtcagcgccgtagcctacgccggtgtttgacgcagaagtataaatcagccttaagcgaTAGGTTTTTAAGATTCAGACTGTCTTCGTCAGATTGGTTGAGTTTGTTTCTTACTTGACTTACATAAAATAAAAGCTCCTCCTCAGAGAATCATCACTTCTTCTTTCGCACCATCGAGAAGGTTGAACCATTCATAAGATTTACAAAAGGAGGAACTTTCTGACATTTGAAATGGTGAGAATTTCATATTATTTAAGATTAATAATAGTGTACAtgctaaaatgtttatatgagAAACCTGTTTTTCTTAAATTTGTGAATCATAATAACCATGCAGTAATGTATGTGCTGTTTAAAATCTTGATATGGATCACTTTGCAGAAAGACTAGCTGTTTATATCCTTGAATGCTTGATGCAGTCGGTCGTCTGCtatcagaaatataaaataagctCTGACTGACTCTCAGCTTGCCGCGGTTTTCTTATTTGTTCTAGTTTCATCCATTTGTATCATCTAACTTTTCATTTTGATAACCTTTATTTAAATTCAGATCAATACTTCATGGCTATTTGTTAGTAGTCAACTAGTCATTAAtgcaaaacaagcaaaaataaactaTCGCTATATCTTTCTGTTCTCAATAGATGTTATCAGTGAGAATCTTTGTGACTGCATGCGAGTGGATGCTCCTGGCTTTGTTTTCTGGTAACGATTATGCAGTTCTGTTTAATCTTCGTACTGTTATTCAACATTAAACATACTTATTTCTTTAATATGCCTGCTTTTTTTAGCTGTTGTAGCTGGATATACATCTTTAACCAACACATCAGTTCAAACTGTTCATCGAGGAGCGTCAGTCAATATTAGCTGTAGATACAAACCATCAGATGAAACTGTCGCTTTTGATGTGAAActagaaaacaaatatagctatTATACATTGTGCTCAGTAAAGATTATGAACAATTCATTGATTAGTCAATCTTGTAAGTATAATGTTAGATTAATTTAATCCTTAATAGCATCTCATTTGAGGTATCAAATCTGCAAATAATTGATACTGGCACTTATAAATGTGTTCAGACCAGAACCATTCCACCTCCTTCAGTTGTTTTGCGAGAAGACAGAACATTTGTTCAAGTGATTGGTAAGTTAATTATGACTAGAAGTAAATTGATATGTGATGGTAGATATTATACAATGAATTAACATGTTTATGCTGTTAAAACTATTACCGCTTCAATTTCTTACAGCTCGCCCCACTGTGTCTGTATCACAAACAAGAGCATTGGATGGATTTACAATCCTTTGCAGCTCTGAAGAGTTTTATCCTTCAGCTATAGAACAGGTGTGGATGAGAAATGGAGAATTTCAGAACATTTCTCAGACACTAAACATTAACAAAACCAACCCAGATGGATCCTTCACTCTCCATTCATATCTGAATACATCTGACTGTGAAAACTACTCGTGTTGGGTGAACCACTCGACCTTAAGCCAACCAACAACTCTTCATGTGCTCCCTAATTACTGTAACAAGGACCGAGGTATCACCTATTTTGTGTTTGTAATTGATGTTACATAGCAGTCTCATAATAGTAATAGATCCCACACATTCTGAAAATGCTGCATTTTTTAAGCCAATTTAAGTAAGATATTAAACCTAAAAATAGGATTAAATTTGGcattataactttattttaacaaataaaaaatcccTAGCTTTTTTAAAGTGTAGCATGTTTGAAATGCAATAATTGTGCTTGTTTATTCTgctttaataactgtttttaataCTGCAGGTGTATGGATAGCTGTGAAGACTTCTGCATTGCTGATTATTGTCATAATACTCATTATTGCAGTCTTCTGTGCACATTACAGTGAGTGTAACCTTCTTcctaaaatgtaatgcaaaatgtAATGCACAGCATGTTTTGTAAATGTGATAGTAAAAATGGCAGCTTTTTGGCATCCCAAATATAGTTAGAATCATGCATtggaattaataatattaatatgttgcaGGGTCGCGCAATCTTCAAAGTCAAAATGTTCAGAATTACACAAATCAAGTTGTCATGTTCATCCAGTAAGAGCCTATCACAGGTTCTCCTGTCCAATCTGACACCCCCATCACTGCATAATCACGATCCAGTCCCATGCAGCCTGGTCAGACTCCACGCATGACCACATGAAGCTTTTTCACTATGATTGATGTTGTCTGATTCATTCACTAACCCTAACTTGTTTGTGTATAGTAATACAGAGTTTCATGCAACAATTCATACtggttcttgattctgattggctgagaggtCTTTATCTCCATGTGATCTTCCTGTAGGCTATTATTACAGTAAACTCTTTACAGAATTTCGAACATGAAGAGTCGTGTCAAAGGACCAAAGCCactataaatgtacaaatattactgttgttgtgtcactgaatgtattttaaagagGTTAGAATGTAGTTGTAGATGTATGGCATGTGAACGCAAGGTATCTGTGTTTCAGCACTTATGAAACCAAAGACAGCTTTACTTTGGCCAGTTCTTCTGGAATCAACTGCTGGCGATGTATGTAAAGtggtaaaatataataattaattgtaaGTAATAAGGAGCCATCTTTGGTATCTTTAATCTGTTATTTGTTCCAGAGCAAACTGTTTTTAGGTAACGTTTCTTAACTTTTATCTGCCTTTACTTAACACTTATTAACACTGTCATTGTGCTTTTGATAAATAACATTTGTAATGTGTGTTGTTGTATATGAGCAAGAGAATCtaatttttatgcaatattaatGTTCAGTAAAACATGCTGCctatattaaaaatcatttatatGGTATTAATAAACAGTGTGCGCTGTTGGTAATTTGCAGTTCTGGTTGCATTGTTATTTCAATAGAATTGCACAGGAGACTTTACTTTTGTGACTTTTAAAGtggctttttttgttatttttgaattTAGATAGATCACCTGAAAGCTGGATAGACAAGACTTTAATTGTTGTATTGAAACCACCGTGCATATTTTCTACAATTGCATCTACTCAGAGTTATTTTGGTCTCATATACATGACAGATTTCTCATGTCAATATCTATGTAAACCCTTTTTGCTGTAAACGATTTAAATTTGGTGTAACTAAAGAAAATTGTACTCAGCATTAcctagttaataatattttattctttgtAAAAATTTATCAATAACCCCCTCacccccctcacacacacacacacacacacacacacacacacacacacacacacacattttacactATATTAATAAACTTGCTTCATCACTTAGTACTTTGTCAAATGATAAAGTAACTTAATTTTGTACCCTATAGCCCCTTCACAACCCTTTGAAGGGTTATATTGTGTAaacttttataatttattttatttaattattattattttatttatttattaactttttttacatCAG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006072 False 2624 lncRNA 0.35 6 28382085 28385554
TCONS_00006071 False 2455 lncRNA 0.35 6 28382085 28385554
TCONS_00006073 True 3485 lncRNA 0.34 1 28382085 28385569

Neighbor

gene id symbol gene type direction distance location
XLOC_002827 btg3 coding downstream 1157 28370816 ~ 28380928 (-)
XLOC_002826 cltca coding downstream 13172 28311031 ~ 28368913 (-)
XLOC_002825 CR392341.5 coding downstream 89126 28292843 ~ 28292959 (-)
XLOC_002823 NA coding downstream 90096 28197916 ~ 28291989 (-)
XLOC_002824 NA coding downstream 133342 28246835 ~ 28248743 (-)
XLOC_002829 CR392341.4 coding upstream 6857 28392426 ~ 28395620 (-)
XLOC_002830 NA coding upstream 32082 28417651 ~ 28418179 (-)
XLOC_002831 CR392341.1 coding upstream 57171 28442740 ~ 28443740 (-)
XLOC_002832 CR392341.2 coding upstream 62337 28447906 ~ 28448868 (-)
XLOC_002833 CR392341.3 coding upstream 68931 28454500 ~ 28455171 (-)
XLOC_002819 AL844197.1 non-coding downstream 967723 27414246 ~ 27414362 (-)
XLOC_002817 BX248510.3 non-coding downstream 1212013 27169956 ~ 27170072 (-)
XLOC_002834 NA non-coding upstream 74644 28460213 ~ 28465026 (-)

Expression


Co-expression Network