G931320


Basic Information

Item Value
gene id G931320
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85150294 ~ 85153125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1061040
CTTTACGGTAACCCAGCCTAGACCCTAATGAaagagctttacagtaacccagcctagaccCTAATGAAAGAGCTTTACAGTAAGCCAGCCTAGACCAAGAGCAAGCAAAGCAGAAGCCAGACCACAGTGGCTGTAAGGCTTAGTGAGGTGCGTAGTGAGGTGCGTAGTGAGGTGCGTCAGAGAAGTCAGACCACAGTGGCTGTAAGGCGTAGTGAGGTGCGTAGTGAGGTGCGTACTGGCgtcagagagagactgtgttACAACGGTGCAGTTTAATAATACAAATCATtgtgaacaaaaacaataaataaatacaatgggGACGAAACCCTTCGCACGccagacataacgtgcacaaACTCTTACAATCAACaattccggacaaggacatggggggggggggggggggggggggggggggttaaatacacaacatgtaattgatggaattgaaaccagggaagacaagacaaaacaaatggaaaatcaaaaaaggtggatcggcgatggctagaaggccggtgacgtcgaccgccgaacgccgcccgaacaaggagagggaccaacttcggcagaagtcgtgacagCACATTTGGCACAACGGTTGGGATGCCAGTTGTATCAGAGTTTTTCTGCACAGAAATAAACTACACAAGCGTGTGGAGAAACCGCTCAATGGATCTGCAACAAACTCTTCATTGCATCACAAAAAATAAATCAGATCACAACCATTGTGTCCAATGTGTTGTAGATCAGTTGGCAGAACCTGAGTGTGAACGGGGCCAAAACTACAAAACACAAACCTAAGCTGTGACTGAGTGGAACAGACGGTGAAACTGAGACTCAGGGCTAACGGACAGCTGATACCTCACACTGGGCCAGGGAGAGGACCAAATATAGATCAAAAAAACGTGTTTCAGTTTCTCAAAGACGTGTTTGAACATGTCATGGTTGTTGTTATTGTAGTTTATATCTGTGTGTAAGGTTGTAAAATTCAAGTAACTTTCAATTAAATTCCCAGGATTTCCTGCCTGAAGAACTGGCATTCCCAaaagaagaacgttgtttcttaacgttctctgaacaaATTTGAGAACATTAATTTATATAGAACCGTGAGGAAACGTTATTGGAAAGTTGTATGCAATATAACCCCAGGAACAAACACACTCTCaccaagtagtgcactgtgtagggaagagGGTTCTATTGGTGACATAGATGTGATGtcatagtgcactgtgtagggaacaaGCTCTATGATGTTCTACTTTCCTTtctttaactgggcaagtcactgaagaactaattcttattttacattgatggcctaccccgggccaaaccccaGCTAAACCCCGGCCAAACCCCGGCTAAACCCCGGCCAAACCCCTGCTAAACCCCGGCCAAACCCCGGCTACACCCCGGGCCAAACCCCGGCTAAACCCCGGCtaaaccccggacgacgctgggacaattgtgcgccgccctatgggacttcacGATAACGGCCGGTTGTGGTAGAGGCCccggatcgaaccagggtctgtagtgacgcctctatagCGCTGCGACGCGGTGCCTTTAGACCGCAGCGCCACTCGGGTTAACATATGGTtttcagaacgttatgtgctagctgggaaacATCCAAAAGTTACTAAGTGCTACATTTCAGATAAACCACTGCAAATACATACATTACGTAGTTGCAGTACTATATAGATATGCTACATATTCTACATACACAAGTCATCACTGTGTTCCTAAGACAGTTAAATACACAACTCTTAATACTATATTTGAAAGGACTGTTCCTCTGAAATCTTCATTCACCATGATTCCCTAGGGTCTTCCTTCAGTTATCCCCGTTTTAAAAAAGACCACTCTACGCTATTTGTGAACTGTTTCCCACTGAGAAACGACAGCTCCAGTGGAAATACATTCAGGTTAATGCAGTTTGCAGACGACCCACTTCCTCGTTTGATTTCAGCTCTCCGGGTGTTTCTGCCCGATTAGATACAATCTGACCCAACCATCCATTCCGTTGCCGTGGTAACGAGCCACCTCATGAATAAAATGACCAGTTGTAAGACAGTGCAGTGAATGTATCCGGTGACTGAGTAGAAGTTGTCGCCGTGGTAACGAGCCACCTcatgaaaaaaaaataatacaaaacgGCTTCCAGAAGAGAACAGCAGCAACTGTGTGTAACTGTAGCAACCGTTCCCTTCGGGTGTTCCAACCAGAGACACGCCCCTTTTCAcgcctctgtccgtctgtccatcAACCCATCCCTTTAAATCACTAAGTTGCTCTTCAAATGAAGTTGTATTGAATTGAATTCCTTCATTTCCTATATCCCCCCCCGAGTCCATTTTGAAAAATGGCTGCCACTGTCTCTTCCACCACTAGTTGGTCACACGTTGATCCTTTAGGacaggaagggaggggggagagggggagacaaggTCCAAGACAAACTATTATACACATTAAAACATTCCAGGACAAAAATAAAGTTGTACTGAATTGAAATCCTTCTATCCATCCTCTTTGTATTTTTCTCCCAGTCactacatctctctccttcctcgtcCTGTCACACGTCGATACGTGccgagaggaagggagagaagaagaagtcGAACGCGAACTTGACGGAGTTGAGTGTGGTCCGTCTCCAGTCTCTCTCGATCTTCACCTGCAGAGAGGAAA
>TU1061038
TCTACATACACAAGTCATCACTGTGTTCCTAAGACAGTTAAATACACAACTCTTAATACTATATTTGAAAGGACTGTTCCTCTGAAATCTTCATTCACCATGATTCCCTAGGGTCTTCCTTCAGTTATCCCCGTTTTAAAAAAGACCACTCTACGCTATTTGTGAACTGTTTCCCACTGAGAAACGACAGCTCCAGTGGAAATACATTCAGGTTAATGCAGTTTGCAGACGACCCACTTCCTCGTTTGATTTCAGCTCTCCGGGTGTTTCTGCCCGATTAGATACAATCTGACCCAACCATCCATTCCCGTCGTAAAAAAAACGCTTGCCCGCAGCTCGTTGCCGTGGTAACGAGCCACCTCATGAATAAAATGACCAGTTGTAAGACAGTGCAGTGAATGTATCCGGTGACTGAGTAGAAGTTGTCGCCGTGGTAACGAGCCACCTcatgaaaaaaaaataatacaaaacgGCTTCCAGAAGAGAACAGCAGCAACTGTGTGTAACTGTAGCAACCGTTCCCTTCGGGTGTTCCAACCAGAGACACGCCCCTTTTCAcgcctctgtccgtctgtccatcAACCCATCCCTTTAAATCACTAAGTTGCTCTTCAAATGAAGTTGTATTGAATTGAATTCCTTCATTTCCTATATCCCCCCCCGAGTCCATTTTGAAAAATGGCTGCCACTGTCTCTTCCACCACTAGTTGGTCACACGTTGATCCTTTAGGacaggaagggaggggggagagggggagacaaggTCCAAGACAAACTATTATACACATTAAAACATTCCAGGACAAAAATAAAGTTGTACTGTATTTTTCTCCCAGTCactacatctctctccttcctcgtcCTGTCACACGTCGATACGTGccgagaggaagggagagaagaagaagtcGAACGCGAACTTGACGGAGTTGAGTGTGGTCCGTCTCCAGTCTCTCTCGATCTTCACCTGCAGAGAGGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1061040 False 2718 lncRNA 0.46 4 85150294 85153125
TU1061038 True 981 lncRNA 0.46 2 85152116 85153125

Neighbor

gene id symbol gene type direction distance location
LOC110517086 LOC106590778 coding upstream 518 85105137 ~ 85149776 (+)
LOC110516354 LOC106610426 coding upstream 303488 84843532 ~ 84846806 (+)
LOC110498551 LOC106610561 coding upstream 309198 84835276 ~ 84841096 (+)
LOC110514534 LOC106610412 coding upstream 489916 84654783 ~ 84660378 (+)
LOC110513002 LOC106610425 coding upstream 648106 84471592 ~ 84502188 (+)
LOC110515429 LOC106610570 coding downstream 44880 85198005 ~ 85221752 (+)
LOC110515949 LOC106591060 coding downstream 83318 85236443 ~ 85448659 (+)
trnae-cuc-167 NA coding downstream 303299 85456424 ~ 85456495 (+)
LOC118936854 NA coding downstream 313051 85464789 ~ 85466981 (+)
LOC110513232 LOC106594638 coding downstream 319038 85472163 ~ 85594820 (+)
G931315 NA non-coding upstream 14494 85135105 ~ 85135800 (+)
G931312 NA non-coding upstream 20742 85128708 ~ 85129552 (+)
G931308 NA non-coding upstream 50989 85095877 ~ 85099305 (+)
G931306 pi4k2b non-coding upstream 59026 85090823 ~ 85091268 (+)
G931303 NA non-coding upstream 76386 85071532 ~ 85073908 (+)
G931324 LOC106597865 non-coding downstream 1018 85154143 ~ 85156911 (+)
G931332 NA non-coding downstream 24479 85177604 ~ 85177999 (+)
G931333 NA non-coding downstream 25222 85178347 ~ 85179207 (+)
G931335 NA non-coding downstream 28717 85181842 ~ 85188671 (+)
G931108 LOC107756720 other upstream 473216 84676559 ~ 84677078 (+)
G930572 LOC106593948 other upstream 994580 84154939 ~ 84155714 (+)
LOC110515513 LOC106594142 other upstream 1004620 84130437 ~ 84282587 (+)
LOC110516172 htt other upstream 1140863 83981478 ~ 84112196 (+)
G931587 NA other downstream 321161 85474286 ~ 85475128 (+)
G931588 NA other downstream 322496 85475621 ~ 85476131 (+)

Expression


Co-expression Network