G931494


Basic Information

Item Value
gene id G931494
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85437357 ~ 85445000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1061336
GTGTTTGGTTCTCTTCTCCTGTATAAACAGCTACAGTTGGCTGTGTTGGTTCTCTTCTCCCGTATAAACAGCTACAGTTCTCTGTGTTGGTTCTATTTCCCTGTATAAACAGCTACAGTTCTCTGTGTTTGGTTCTCTTCTCCTGTATAAACAGCTACAGTTGGCTGTGTTGGTTCTCTTCTCCCGTATAAACAGCTACAGTTCTCTGTGTTGGTTCTCTTCTCCTGTATAAACAGCTACAGTTCTCTGTATTGGTTCTCTTCTCCTGTATAAACAGCTAATAGAAATAGAATTGcgcccaaatcaaatcaaagtttatttgtcacgtgcgccgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacatgtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaa
>TU1061341
atacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtggaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaac
>TU1061342
gaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatactgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1061336 False 641 lncRNA 0.41 2 85437357 85442063
TU1061341 False 311 lncRNA 0.41 2 85438263 85439561
TU1061342 True 478 lncRNA 0.40 3 85441901 85445000

Neighbor

gene id symbol gene type direction distance location
LOC110515429 LOC106610570 coding upstream 219614 85198005 ~ 85221752 (+)
LOC110517086 LOC106590778 coding upstream 287581 85105137 ~ 85149776 (+)
LOC110516354 LOC106610426 coding upstream 590551 84843532 ~ 84846806 (+)
LOC110498551 LOC106610561 coding upstream 596261 84835276 ~ 84841096 (+)
LOC110514534 LOC106610412 coding upstream 776979 84654783 ~ 84660378 (+)
trnae-cuc-167 NA coding downstream 11424 85456424 ~ 85456495 (+)
LOC118936854 NA coding downstream 21176 85464789 ~ 85466981 (+)
LOC110513232 LOC106594638 coding downstream 27163 85472163 ~ 85594820 (+)
LOC110510945 LOC106591917 coding downstream 119171 85564171 ~ 85594820 (+)
LOC118966668 LOC106592313 coding downstream 448854 85893094 ~ 85950607 (+)
G931493 NA non-coding upstream 3752 85432963 ~ 85433605 (+)
G931478 NA non-coding upstream 87500 85349551 ~ 85349857 (+)
G931474 NA non-coding upstream 100414 85336137 ~ 85336943 (+)
G931467 NA non-coding upstream 126072 85310697 ~ 85311285 (+)
G931464 NA non-coding upstream 135639 85301015 ~ 85301718 (+)
LOC110515949 LOC106591060 non-coding downstream 3354 85236443 ~ 85448659 (+)
G931436 NA non-coding downstream 5530 85450530 ~ 85451295 (+)
G931568 NA non-coding downstream 8907 85453907 ~ 85455663 (+)
G931569 NA non-coding downstream 9758 85454758 ~ 85455243 (+)
G931579 NA non-coding downstream 12984 85457984 ~ 85458509 (+)
G931108 LOC107756720 other upstream 760279 84676559 ~ 84677078 (+)
G930572 LOC106593948 other upstream 1281643 84154939 ~ 84155714 (+)
G931587 NA other downstream 29286 85474286 ~ 85475128 (+)
G931588 NA other downstream 30621 85475621 ~ 85476131 (+)
G931574 LOC106591917 other downstream 71598 85516598 ~ 85592174 (+)
G931571 LOC106592710 other downstream 78956 85523956 ~ 85594973 (+)

Expression


Co-expression Network