G931574 (LOC106591917)


Basic Information

Item Value
gene id G931574
gene name LOC106591917
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85516598 ~ 85592174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1061455
GCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGCTGTGGTGATGACAGGTTCTTCCAGACTGTGTGTGAATCCATCCCTGTGAGGTCCAGAGAGGAGGACCAGCAGTTGGCCTCTCTCCTCCAGGCATTGGGCTCCACCCTGTCACTGGGAGGAGAGTTACCCAGGAAAACCTGCAGGTCTGTGGGGAGAGTCCTGGGTCTCTGTGCCTCCAGAGTGGACCTCACTCTCACCCCCAGCAAGATCTCTCTCCAAGGAGCCGCACTTCTTTTGAGACATGAGTCAAAGCTCCACAAGCTCAGGCTGAGTGTTGGTGTGGCAGTGAAACTGTCCAGACTGgttaggaggacagggagaggtgctACTCCACTGACTGTCCCAGAACTCTCCCTGGTCCTAAAGAGCAGCCAGCCACCAGAGAGAGTGTTATCCAGGGCTCTGAGTAGTGTGGCGTCCCTGCTGAGACTCTGGAGGGTTCAGTGTCTGGACCTGACTGACTTCTGCATTCAGGGTCACTCTCTCATCACACTGCTGTGTCACCag
>TU1061456
GCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGGTTGTGTGTTGATTATggtgaagagaagaagaagaaggcctGGACGGTTCTGTCTAAACTCAGTGTTGCTGCAGCTGAGTTTgataaagagacaggagagaataTCTTAAAGACATTATCCTCCATGTGCAGATACACATATGGTgaagatgatgatggtgatgatggtaatCCATTTAGAGAGAGTGATTTCCTGTTGGATCTGTACTCACATGTGAAGGACTATGAGACTCAAACAGGCAGGAGTGTCCTTCCAGCATTACAGACAGTTTACCAGTCAGCTCCTGCagtctggtccatagacctctcAGAGAGAAAGGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGATGAAGAGAGTGAAGTGAAGAGTGTCCTTCAGTGTCTGTCCTACATCTCACAGCTGAGCTGTGGTGATGACAGGTTTTTCCAGACTGTGTGTGAATCCATCCCTGTGAGGTCCAGAGAGGAGGACCAGCTGTTAGCCTCTCTCCTCCAGGCCTTGGGCTCCACCCTGTCACTGGGAGGAGTGTTACCCAGGAAAACCTGCAGGTCTGTGGGGAGAGTCCTGGGTCTCTGTGCCTCCAGAGTGGACCTCACTCTCACCCCCAGCAAGATCTCTCTCCAAGGAGCCGCACTTCTTTTGAGACATGAGTCAAAGCTCCACAAGCTCAGGCTGAATGTGGGTGTGGCAGTTAAACTGTCCAGACTGgttaggaggacagggagaggtgctACTCCACTGACTGTCCCAGAACTCTCCCTGGTCCTAAAGAGCAGCCAGCCACCA
>TU1061457
GCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGTTTCTGTCCACGGAGGTCTGATTCCTCAAAGCAGATCAAGTTCCTGGTGGATCTCCTGTCTCAAGCAGCAGAGTGGGAGGagcagacaggagagaagacactGAAGCTGGTATCATCAGTGTGTACTTACAGCACCTTTCCTTATCGCCATGGAGACAATTCTGAACAGAGTGATTTCCTGCTGGATCTGTACTCACATGTGAGGGACTATGAGACTCAAACAGGCAGGAGTGTCCTTCCAGCATTACAGGCAGTTTACCAGTCAGCCAGGCCTGCagtctggtccatagacctcAGAAAGAGAAAGGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTTAAGAGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGTTTCCATCCATGGAGGTCTGATCCCTCAAAGCAGATCAAGTTCCTGGTGGATCTCCTGTCTCAAGCAGCAGAGTGGGAGGagcagacaggagagaagacactGAAACTGGTATCATCAGTGTGTACTTACAGAACCTTTCCTTTTCTCAGTGGATACAATCATAAACAGAGTGATTTCCTGTTGGATCTGTTCTCACATGTGAAGGACTATGAGACTCAAACAGGCAGCAGAGTCCTTCCAGCATTACAGACAGTTTACCAGTCAGCTCCTGCagtctggtccatagacctctcAGAGAGAAAGGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGTCCTACATCTCACAGCTGAGTTTCTGTCCAGTCTGGTCTGATCCCTCAAAGCAGATCAAGTTCCTGGTGGATCTCCTGTCTCAAGCAGCAGAGTGGGAGGagcagacaggagagaagac
>TU1061460
GCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGTTTCTGTCCACGGAGGTCTGATTCCTCAAAGCAGATCAAGTTCCTGGTGGATCTCCTGTCTCAAGCAGCAGAGTGGGAGGagcagacaggagagaagacactGAAGCTGGTATCATCAGTGTGTACTTACAGCACCTTTCCTTATCGCCATGGAGACAATTCTGAACAGAGTGATTTCCTGCTGGATCTGTACTCACATGTGAGGGACTATGAGACTCAAACAGGCAGGAGTGTCCTTCCAGCATTACAGGCAGTTTACCAGTCAGCCAGGCCTGCagtctggtccatagacctcAGAAAGAGAAAGGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTTAAGAGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGTTTCCATCCATGGAGGTCTGATCCCTCAAAGCAGATCAAGTTCCTGGTGGATCTCCTGTCTCAAGCAGCAGAGTGGGAGGagcagacaggagagaagacactGAAACTGGTATCATCAGTGTGTACTTACAGAACCTTTCCTTTTCTCAGTGGATACAATCATAAACAGAGTGATTTCCTGTTGGATCTGTTCTCACATGTGAAGGACTATGAGACTCAAACAGGCAGCAGAGTCCTTCCAGCATTACAGACAGTTTACCAGTCAGCTCCTGCagtctggtccatagacctctcAGAGAGAAAGGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGACGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGTTTTACTCCTTCACAGGGTCAGAGAAGATCCcctgaagagaggagaaagagagagaggacattccTACTGAATCTGTGCCTTCAAGCAGCTCTCCATGAGAGAGAAACCATACAAACAACTGTAGAGAAAGTGTTGTCACTGTCTAAAGTACATCACAACCAGAAATGTGATTTCCTGCTGGATCTGTTCTCACATGTGAAGGACTATGAGACTCAAACAGGCAGGAGGGTCCTTCCAGCATTACAGCCAGTTTACCAGTCAGCTCCTGCagtctggtccatagacctctcAGAGAGAAAGACCTCCCGCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGACTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGGTGAGTTGGATCAGTACAGTTCAGAGATTGTAGTTGTCTTATAGAGGAAGCCTGTAGATTTCTGCAGTAACTTAACAAACTAAACAGAAACATACTGTTTGGAAAATATGC
>TU1061459
AACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGACTGGTCAGATGAAGAGAGTGAAGTGAGGAGTGTCCTTCAGTGTCTGCCCCACATCTCACAGCTGAGCTGTGGTGATGACAGGTTCTTCCAGACTGTGTGTGAATCCATCCCTGTGAGGTCCAGAGAGGAGGACCAGCAGTTGGCCTCTCTCCTCCAGGCATTGGGCTCCACCCTGTCACTGGGAGGAGAGTTACCCAGGAAAACCTGCAGGTCTGTGGGGAGAGTCCTGGGTCTCTGTGCCTCCAGAGTGGACCTCACTCTCACCCCCAGCAAGATCTCTCTCCAAGGAGCCGCACTTCTTTTGAGACATGAGTCAAAGCTCCACAAGCTCAGGCTGAGTGTTGGTGTGGCAGTGAAACTGTCCAGACTGgttaggaggacagggagaggtgctACTCCACTGACTGTCCCAGAACTCTCCCTGGTCCTAAAGAGCAGCCAGCCACCAGAGAGAGTGTTATCCAGGGCTCTGAGTAGTGTGGCGTCCCTGCTGAGACTCTGGAGGGTTCAGTGTCTGGACCTGACTGACTTCTGCATTCAGGGTCACTCTCTCATCACACTGCTGTGTCACCag
>TU1061458
TCAAACAGGCAGGAGTGTCCTTCCAGCATTACAGACAGTTTACCAGTCAGCTCCTGCagtctggtccatagacctcAGAAAGAGAAAGGCCTACCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTAGAGCTGAAGGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGTCCTACATCTCACAGCTGAGCTGTGGTGATGACAGGTTCTTCCAGACTGTGTGTGAATCCATCCCTGTGAGGTCCAGAGAGGAGGACCAGCAGTTGGCCTCTCTCCTCCAGGCATTGGGCTCCACCCTGTCACTGGGAGGAGAGTTACCCAGGAAAACCTGCAGGTCTGTGGGGAGAGTCCTGGGTCTCTGTGCCTCCAGAGTGGACCTCACTCTCACCCCCAGCAAGATCTCTCTCCAAGGAGCCGCACTTCTTTTGAGACATGAGTCAAAGCTCCACAAGCTCAGGCTGAGTGTTGGTGTGGCAGTGAAACTGTCCAGACTGgttaggaggacagggagaggtgctACTCCACTGACTGTCCCAGAACTCTCCCTGGTCCTAAAGAGCAGCCAGCCACCAGAGAGAGTGTTATCCAGGGCTCTGAGTAGTGTGGCGTCCCTGCTGAGACTCTGGAGGGTTCAGTGTCTGGACCTGACTGACTTCTGCATTCAGGGTCACTCTCTCATCACACTGCTGTGTCACCag

Function

NR:

description
uncharacterized protein LOC110513583

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1061455 False 616 lncRNA 0.55 3 85516598 85592174
TU1061456 False 937 TUCP 0.50 4 85516598 85519844
TU1061457 False 1074 lncRNA 0.49 5 85516598 85590612
TU1061460 False 1515 lncRNA 0.48 4 85516598 85587212
TU1061459 False 611 lncRNA 0.55 3 85579671 85592174
TU1061458 True 724 lncRNA 0.54 3 85588224 85592174

Neighbor

gene id symbol gene type direction distance location
LOC118936854 NA coding upstream 49617 85464789 ~ 85466981 (+)
trnae-cuc-167 NA coding upstream 60103 85456424 ~ 85456495 (+)
LOC110515949 LOC106591060 coding upstream 67939 85236443 ~ 85448659 (+)
LOC110515429 LOC106610570 coding upstream 298855 85198005 ~ 85221752 (+)
LOC110517086 LOC106590778 coding upstream 366822 85105137 ~ 85149776 (+)
LOC118966668 LOC106592313 coding downstream 301680 85893094 ~ 85950607 (+)
LOC118936495 LOC106594836 coding downstream 308382 85900556 ~ 85920664 (+)
LOC110516966 LOC106591460 coding downstream 336983 85929157 ~ 85945181 (+)
LOC110528615 LOC106597603 coding downstream 358856 85951030 ~ 85957092 (+)
LOC118966669 LOC106591460 coding downstream 402362 85994536 ~ 86008800 (+)
G931599 NA non-coding upstream 16993 85498028 ~ 85499605 (+)
LOC110513232 LOC106594638 non-coding upstream 42864 85472163 ~ 85594820 (+)
G931585 NA non-coding upstream 44746 85467391 ~ 85471852 (+)
G931586 NA non-coding upstream 48008 85468293 ~ 85468590 (+)
G931691 NA non-coding downstream 55821 85647995 ~ 85648263 (+)
G931696 NA non-coding downstream 100891 85693065 ~ 85693718 (+)
G931699 NA non-coding downstream 103071 85695245 ~ 85695605 (+)
G931702 NA non-coding downstream 114712 85706886 ~ 85707330 (+)
G931703 NA non-coding downstream 115209 85707383 ~ 85708450 (+)
G931588 NA other upstream 40467 85475621 ~ 85476131 (+)
G931587 NA other upstream 41470 85474286 ~ 85475128 (+)
G931776 NA other downstream 193326 85785500 ~ 85786498 (+)
LOC110528614 LOC106592313 other downstream 419625 86008932 ~ 86017575 (+)
LOC110510945 LOC106591917 coding downstream 44327 85564171 ~ 85594820 (+)
G931573 LOC106591917 non-coding downstream 3676 85523520 ~ 85593941 (+)
G931571 LOC106592710 non-coding downstream 4112 85523956 ~ 85594973 (+)
G931624 NA non-coding downstream 49578 85569422 ~ 85569797 (+)
G931627 NA non-coding downstream 55458 85575302 ~ 85590375 (+)

Expression


Co-expression Network