G931571 (LOC106592710)


Basic Information

Item Value
gene id G931571
gene name LOC106592710
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85523956 ~ 85594973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1061447
ACTTCAGCTGCTGGACCTTGTGTGTGAGGGGATTGAAGAGGGGCTGCTGAGGCACGCAGAGTCCCTGTGCAGAGCCCTGGATGGGGAGCTGGACCTCAGTGAGACCAGGCTGGACCAGAAGGCCTGTGGATCTCTGGCCATGGTTCTGGAACACTCAGAGGGTCTGTCAGAACTGGACCTCAGCCACTGTCAACTCACAGACCACCAGCTACAGCCCCTGATCACACACCTGCATAAAGTACAAGTCCTGGAcCTGAGCCACAATGACATCACTGATGCTCTGACTGACAGAATACTCCAACTGGTCTCTACCAACACTTCAATACACACCGTACGACTCTTCAACAACAGAATCCAGGACAGAAGACCCTTCCTGACAGACAAGAGGTTTGACATCTGG
>TU1061450
ACTTCAGCTGCTGGACCTTGTGTGTGAGGGGATTGAAGAGGGGCTGCTGAGGCACGCAGAGTCCCTGTGCAGAGCCCTGGATGGGGAGCTGGACCTCAGTGAGACCAGGCTGGACCAGAAGGCCTGTGGATCTCTGGCCATGGTTCTGGAACACTCAGAGGGTCTGTCAGAACTGGACCTCAGCCACTGTCAACTCACAGACCACCAGCTACAGCCCCTGATCACACACCTGCATAAAGTACAAGTCCTGGAcCTGAGCCACAATGACATCACTGATGCTCTGACTGACAGAATACTCCAACTGGTCTCTACCAACACTTCAATACACACCGTACGACTCTTCAACAACAGAATCCAGGACAGAAGACCCTTCCTGACAGACAAGAGGTTTGACATCTGGTGAAACAACATCAGGTCTTAGTTCAGGAAGAGAAGGCTGAATCCAGGACAGAAGACCCTTCCTGACAGACAAGAGGTTTGACATCTGGTGAAGATAATGCTGTATAATGACAGGATAATGTGGTCAATGTAGAAGATCTGGTGATGATAATGTTGTATAATGACACTATAATGTGTCAATGTAGAAGGCAGGTTTGACATGTGGTGATGATAATGTTGTATAATGACACTATAATGTGTCAATGTAGAAGGCTGGTTTGAGATCTGGTGATGATAATGCTGTATAATAACAGGATAATGTGGAACATAAACTGATGGAACATTTTAATACAAAAGACACACAACAAACTGGTTGTTCCAGCTGGAACAGTCCGATCATGTGTAAACTACAGTCAACA
>TU1061448
CACAATGACATCACTGATGCTCTGACTGACAGAATACTCCAACTGGTCTCTACCAACACTTCAATACACACCGTACGACTCTTCAACAACAGAATCCAGGACAGAAGACCCTTCCTGACAGATAAGAGGTTTGACATCTGGTGAAACAACATCAGGTCTTAGTTCAGGAAGAGAAGGCTGAATCCAGGACAGAAGACCCTTCCTGACAGACAAGAGGTTTGACATCTGGTGAAGATAATGCTGTATAATGACAGGATAATGTGGTCAATGTAGAAGATCTGGTGATGATAATGTTGTATAATGACACTATAATGTGTCAATGTAGAAGGCAGGTTTGACATGTGGTGATGATAATGTTGTATAATGACACTATAATGTGTCAATGTAGAAGGCTGGTTTGAGATCTGGTGATGATAATGCTGTATAATAACAGGATAATGTGGAACATAAACTGATGGAACATTTTAATACAAAAGACACACAACAAACTGGTTGTTCCAGCTGGAACAGTCCGATCATGTGTAAACTACAGTCAACA
>TU1061449
CACAATGACATCACTGATGCTCTGACTGACAGAATACTCCAACTGGTCTCTACCAACACTTCAATACACACCGTACGACTCTTCAACAACAGAATCCAGGACAGAAGACCCTTCCTGACAGATAAGAGGTTTGACATCTGGTGAAACAACATCAGGTCTTAGTTCAGGAAGAGAAGGCTGAATCCAGGACAGAAGACCCTTCCTGACAGACAAGAGGTTTGACATCTGGTGAAGATAATGCTGTATAATGACAGGATAATGTGGTCAATGTAGAAGATCTGGTGATGATAATGTTGTATAATGACACTATAATGTGTCAATGTAGAAGGCTGGTTTGAGATCTGGTGATGATAATGCTGTATAATAACAGGATAATGTGGAACATAAACTGATGGAACATTTTAATACAAAAGACACACAACAAACTGGTTGTTCCAGCTGGAACAGTCCGATCATGTGTAAACTACAGTCAACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106592710 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1061447 False 400 TUCP 0.54 3 85523956 85525041
TU1061450 False 797 lncRNA 0.46 4 85523956 85594973
TU1061448 False 538 lncRNA 0.40 2 85594295 85594973
TU1061449 True 475 lncRNA 0.40 3 85594295 85594973

Neighbor

gene id symbol gene type direction distance location
LOC118936854 NA coding upstream 56975 85464789 ~ 85466981 (+)
trnae-cuc-167 NA coding upstream 67461 85456424 ~ 85456495 (+)
LOC110515949 LOC106591060 coding upstream 75297 85236443 ~ 85448659 (+)
LOC110515429 LOC106610570 coding upstream 306213 85198005 ~ 85221752 (+)
LOC110517086 LOC106590778 coding upstream 374180 85105137 ~ 85149776 (+)
LOC118966668 LOC106592313 coding downstream 298881 85893094 ~ 85950607 (+)
LOC118936495 LOC106594836 coding downstream 305583 85900556 ~ 85920664 (+)
LOC110516966 LOC106591460 coding downstream 334184 85929157 ~ 85945181 (+)
LOC110528615 LOC106597603 coding downstream 356057 85951030 ~ 85957092 (+)
LOC118966669 LOC106591460 coding downstream 399563 85994536 ~ 86008800 (+)
G931599 NA non-coding upstream 24351 85498028 ~ 85499605 (+)
LOC110513232 LOC106594638 non-coding upstream 50222 85472163 ~ 85594820 (+)
G931585 NA non-coding upstream 52104 85467391 ~ 85471852 (+)
G931586 NA non-coding upstream 55366 85468293 ~ 85468590 (+)
G931691 NA non-coding downstream 53022 85647995 ~ 85648263 (+)
G931696 NA non-coding downstream 98092 85693065 ~ 85693718 (+)
G931699 NA non-coding downstream 100272 85695245 ~ 85695605 (+)
G931702 NA non-coding downstream 111913 85706886 ~ 85707330 (+)
G931703 NA non-coding downstream 112410 85707383 ~ 85708450 (+)
G931574 LOC106591917 other upstream 4112 85516598 ~ 85592174 (+)
G931588 NA other upstream 47825 85475621 ~ 85476131 (+)
G931587 NA other upstream 48828 85474286 ~ 85475128 (+)
G931776 NA other downstream 190527 85785500 ~ 85786498 (+)
LOC110528614 LOC106592313 other downstream 416826 86008932 ~ 86017575 (+)
LOC110510945 LOC106591917 coding downstream 39130 85564171 ~ 85594820 (+)
G931624 NA non-coding downstream 44381 85569422 ~ 85569797 (+)
G931627 NA non-coding downstream 50261 85575302 ~ 85590375 (+)

Expression


Co-expression Network