G931831


Basic Information

Item Value
gene id G931831
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 85956710 ~ 86016970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1061859
AGGTCAAATAACAACATAGCTACCCAGATCAAAGATAAAGTACTTTTCAGAATGGAAGCATGTTTTTGTGTTGCTGCCTGTAATAAATGTGTCTTATTATAGTTCTATCAtaggaccatcatcacatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcaGGACCATCATCAaatcattatctcaggtgtatcataggaccatcatcaaatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcacaggaccatcatcacatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatctCACTCCTCATCCTTCCC
>TU1061862
AGGTCAAATAACAACATAGCTACCCAGATCAAAGATAAAGTACTTTTCAGAATGGAAGCATGTTTTTGTGTTGCTGCCTGTAATAAATGTGTCTTATTATAGTTCTATCAtaggaccatcatcacatcattatctcaggtgtatcataggaccatcatcaaatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcataggaccatcatcaaatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcacaggaccatcatcacatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatctCACTCCTCATCCTTCCC
>TU1061863
AGGTCAAATAACAACATAGCTACCCAGATCAAAGATAAAGTACTTTTCAGAATGGAAGCATGTTTTTGTGTTGCTGCCTGTAATAAATGTGTCTTATTATAGTTCTATCAtaggaccatcatcacatcattatctcaggtgtatcataggaccatcatcaaatcattatctcaggtgtatcataggaccatcatcaaatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcacaggaccatcatcacatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatctCACTCCTCATCCTTCCC
>TU1061861
tcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcaaGGACCATCATCAaatcattatctcaggtgtatcatagGACCAAATACGCAaatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtacCATAGGACCATCATCtcatcattatctcaggtgtatatcaggaccatcatcacatcacatcattatctcataggaccatcatcacatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcataggaccatcatcacatcattatctcaggtgtatcataggaccatcatcacatcattat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1061859 False 413 lncRNA 0.38 4 85956710 86016970
TU1061862 False 415 lncRNA 0.38 2 85956710 86016970
TU1061863 False 379 lncRNA 0.38 2 85956710 86016970
TU1061861 True 364 lncRNA 0.38 2 86015977 86016620

Neighbor

gene id symbol gene type direction distance location
LOC118966668 LOC106592313 coding upstream 6103 85893094 ~ 85950607 (+)
LOC110516966 LOC106591460 coding upstream 11529 85929157 ~ 85945181 (+)
LOC118936495 LOC106594836 coding upstream 36311 85900556 ~ 85920664 (+)
LOC110513232 LOC106594638 coding upstream 361890 85472163 ~ 85594820 (+)
LOC110510945 LOC106591917 coding upstream 361890 85564171 ~ 85594820 (+)
LOC118936859 LOC106595358 coding downstream 135033 86152003 ~ 86182526 (+)
LOC110513338 LOC106595035 coding downstream 184074 86201044 ~ 86209191 (+)
LOC110514691 uba6 coding downstream 213810 86230780 ~ 86285648 (+)
LOC118936862 NA coding downstream 240287 86257257 ~ 86258475 (+)
LOC118936863 LOC104951401 coding downstream 270611 86287581 ~ 86323830 (+)
G931827 NA non-coding upstream 17898 85935620 ~ 85938812 (+)
G931826 NA non-coding upstream 18384 85934914 ~ 85938326 (+)
G931820 LOC107756720 non-coding upstream 46400 85905328 ~ 85910310 (+)
G931819 NA non-coding upstream 48527 85903271 ~ 85908183 (+)
G931845 NA non-coding downstream 4210 86021180 ~ 86021488 (+)
G931847 NA non-coding downstream 4751 86021721 ~ 86023268 (+)
G931834 NA non-coding downstream 8262 86025232 ~ 86030335 (+)
G931835 NA non-coding downstream 62173 86079143 ~ 86080223 (+)
G931869 NA non-coding downstream 81736 86098706 ~ 86111379 (+)
LOC110528615 LOC106597603 other upstream 4037 85951030 ~ 85957092 (+)
G931776 NA other upstream 170212 85785500 ~ 85786498 (+)
G931571 LOC106592710 other upstream 431669 85523956 ~ 85594973 (+)
G932184 NA other downstream 426080 86441024 ~ 86475840 (+)
LOC110518842 tbc1d1 other downstream 706967 86704406 ~ 86830606 (+)
LOC110511479 klhl5 other downstream 980816 86997786 ~ 87054035 (+)
LOC110516832 wdr19 other downstream 1102112 87057752 ~ 87129649 (+)

Expression


Co-expression Network