G931847


Basic Information

Item Value
gene id G931847
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86021721 ~ 86023268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1061893
gaggtgctagtgtcagatattgaatacaACCAAAAGGTTGTATTTGTCTCACTCAGTTGTGGTTTGATGTGTAAAAATGTAAACATATCTACAAATAGAGGACCATTAGGACAATTCAAGTTGATTTATCAATGACAAATATACTTCATATTAGTAGTCAATACTCACCAATAAGCCATCCGTCCTCAACAGCTCCCTCCTGTAGGCGGAAAGGCCAACACTGTTCTGAAGAACGAACAAGTCGTGCTTTCTACCTGGCCACCACATTCAGTCTTTTACACATAACATTACCTATCATCACCTacacatttaccctgcccccaccACCCAACGGACTATCATCACCTTCACATTAAGAGTAGAAACCTTCTCTGTTCATATAGTCTATCACCTTCACATTAAGAGTAGAAACCTTCTCTGTTCACATTAAGAGTAGATGTCTTCTCTGTTCACATAGTCTATCACCTTCACATTAAGAGTAGATGTCTTCTCTGTTCACATAGTCTATCACCTTCACATTAAGAGTAGAAGCCTTCTCTGTTCATATAGTCTATCACCTTCACATTAAGAGTAGAAGCCTTCTCTGTTCATATAGCCTAGTTGAACTCGTTTTTGGATGGTGCTCTTATGGCGATGTGGCTACCGTCTATTTCTCCATTCGTATTTGGGAACCCATTGATGGCAAAGAAACCCCTCTTAACCTGTTGCGTGTGTGAGATGCCTCTGTCTGAAAAGTTCCccttgccgcctctacactctaaccactaggctaccctgccgcctctacactctaaccactaggctaccctgccgcctctacactctaaccactaggctaccctgccgcccagtgTGTGAGATGCCTCTGGCTGAAAAGTTCCccttgccgcctctacactctaaccactaggctacctgcctcctctacactctaaccactaggcttccctgccgcctctacactctaaccactaggctacctgcctcctctacactctaaccactaggctacctgcctcctctacactctaaccactaggctacctgcctcctctacactctaaccactaggctacctacctcctctacactctaaacactaggctaccctgccgcctctacactctaaccactaggctaccctgccgcccagtgTGTGAGATGCCTCTGGCTGAAAAGTTCCCCCTGCCAAAAACCCGAGGATGGATTTGGATGCAGCGGTGCCAAATCTTCCAACAGATCAGAACAGACATCTCTCATTGTGTTTCCATTATCTCAGTCTGTTATAGTATTTGCACAGTAGTTGACCTTTCACACGTTCCTCTAACTTAACACATTACTGGCCTTTATATGGATGATTATCGTATCAAATGACCTGATGTGGTCAGATTATATACAGCCTGTCAAGACATGTTGAATTCACA
>TU1061894
gaggtgctagtgtcagatattgaatacaACCAAAAGGTTGTATTTGTCTCACTCAGTTGTGGTTTGATGTGTAAAAATGTAAACATATCTACAAATAGAGGACCATTAGGACAATTCAAGTTGATTTATCAATGACAAATATACTTCATATTAGTAGTCAATACTCACCAATAAGCCATCCGTCCTCAACAGCTCCCTCCTGTAGGCGGAAAGGCCAACACTGTTCTGAAGAACGAACAAGTCGTGCTTTCTACCTGGCCACCACATTCAGTCTTTTACACATAACATTACCTATCATCACCTacacatttaccctgcccccaccACCCAACGGACTATCATCACCTTCACATTAAGAGTAGAAACCTTCTCTGTTCATATAGTCTATCACCTTCACATTAAGAGTAGAAACCTTCTCTGTTCACATTAAGAGTAGATGTCTTCTCTGTTCACATAGTCTATCACCTTCACATTAAGAGTAGATGTCTTCTCTGTTCACATAGTCTATCACCTTCACATTAAGAGTAGAAGCCTTCTCTGTTCATATAGTCTATCACCTTCACATTAAGAGTAGAAGCCTTCTCTGTTCATATAGCCTAGTTGAACTCGTTTTTGGATGGTGCTCTTATGGCGATGTGGCTACCGTCTATTTCTCCATTCGTATTTGGGAACCCATTGATGGCAAAGAAACCCCTCTTAACCTGTTGCGTGTGTGAGATGCCTCTGTCTGAAAAGTTCCccttgccgcctctacactctaaccactaggctaccctgccgcctctacactctaaccactaggctaccctgcctcctctacactctaaccactaggctacctgcctcctctacactctaaccactaggctacctgcctcctctacactctaaccactaggctacctgcctcctctacactctaaccactaggctacctacctcctctacactctaaacactaggctaccctgccgcctctacactctaaccactaggctaccctgccgcccagtgTGTGAGATGCCTCTGGCTGAAAAGTTCCCCCTGCCAAAAACCCGAGGATGGATTTGGATGCAGCGGTGCCAAATCTTCCAACAGATCAGAACAGACATCTCTCATTGTGTTTCCATTATCTCAGTCTGTTATAGTATTTGCACAGTAGTTGACCTTTCACACGTTCCTCTAACTTAACACATTACTGGCCTTTATATGGATGATTATCGTATCAAATGACCTGATGTGGTCAGATTATATACAGCCTGTCAAGACATGTTGAATTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1061893 False 1424 lncRNA 0.45 4 86021721 86023268
TU1061894 True 1283 lncRNA 0.44 4 86021721 86023268

Neighbor

gene id symbol gene type direction distance location
LOC110528614 LOC106592313 coding upstream 4146 86008932 ~ 86017575 (+)
LOC118966669 LOC106591460 coding upstream 12921 85994536 ~ 86008800 (+)
LOC110528615 LOC106597603 coding upstream 64629 85951030 ~ 85957092 (+)
LOC110516966 LOC106591460 coding upstream 76540 85929157 ~ 85945181 (+)
LOC118936495 LOC106594836 coding upstream 101322 85900556 ~ 85920664 (+)
LOC118936859 LOC106595358 coding downstream 128735 86152003 ~ 86182526 (+)
LOC110513338 LOC106595035 coding downstream 177776 86201044 ~ 86209191 (+)
LOC110514691 uba6 coding downstream 207512 86230780 ~ 86285648 (+)
LOC118936862 NA coding downstream 233989 86257257 ~ 86258475 (+)
LOC118936863 LOC104951401 coding downstream 264313 86287581 ~ 86323830 (+)
G931845 NA non-coding upstream 233 86021180 ~ 86021488 (+)
G931831 NA non-coding upstream 4751 85956710 ~ 86016970 (+)
G931832 NA non-coding upstream 10609 85959710 ~ 86011112 (+)
G931827 NA non-coding upstream 82909 85935620 ~ 85938812 (+)
G931826 NA non-coding upstream 83395 85934914 ~ 85938326 (+)
G931834 NA non-coding downstream 1964 86025232 ~ 86030335 (+)
G931835 NA non-coding downstream 55875 86079143 ~ 86080223 (+)
G931869 NA non-coding downstream 75438 86098706 ~ 86111379 (+)
G931996 NA non-coding downstream 92041 86115309 ~ 86115551 (+)
G932017 NA non-coding downstream 106331 86129599 ~ 86131642 (+)
LOC118966668 LOC106592313 other upstream 126984 85893094 ~ 85950607 (+)
G931776 NA other upstream 235223 85785500 ~ 85786498 (+)
G932184 NA other downstream 419782 86441024 ~ 86475840 (+)
LOC110518842 tbc1d1 other downstream 700669 86704406 ~ 86830606 (+)
LOC110511479 klhl5 other downstream 974518 86997786 ~ 87054035 (+)
LOC110516832 wdr19 other downstream 1095814 87057752 ~ 87129649 (+)

Expression


Co-expression Network