G932210


Basic Information

Item Value
gene id G932210
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86490343 ~ 86492125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1062459
tctctacaaTCCACAACCACATGtctatcatactgaaacacagagtaggttatctctacaaCCCACAAACACATCTATCACAAATCTATCacactgaaacacagagtaggttatctctacaacccacaaccacatctctatcacactgaaacacagagtaggttatctctacaatccacaaccacatctctatcatactgaaacacagagtaggttatct
>TU1062460
tctctacaaTCCACAACCACATGtctatcatactgaaacacagagtaggttatctctacaaCCCACAAACACATCTATCACAAATCTATCacactgaaacacagagtaggttatctctacaacccagaaccacatctctatcatactgaaacacagagtaggttatctctacaatccacaaccacatctctatcatactgaaacacagagtaggttatctctacaaCCCAGAACCACATCTAGACAACACGGTGAACAATTTTTCCGATGTGCCACTTGAGCAAGGCAATGAACcgtaatttgctccaggggcacaGTACTACTATGGCTGGCCTTGTAAAATAACACGTTTCACTGCATCTGCCCCGGTGTACGTGACAATACCTCAATCTGCTGAGGCGAGAAGAGGTCCCCTCTCATCTGCTTCCTCAGGAAGTCCCGCCCTCCTGGACCATGGCCATTGGCTAGAGGAGACTCCT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1062459 False 220 lncRNA 0.39 2 86490343 86491541
TU1062460 True 479 lncRNA 0.46 2 86490343 86492125

Neighbor

gene id symbol gene type direction distance location
LOC118936866 NA coding upstream 80471 86405457 ~ 86409872 (+)
LOC118936865 NA coding upstream 93809 86395193 ~ 86396534 (+)
LOC110514239 LOC106594008 coding upstream 95277 86368819 ~ 86395066 (+)
LOC118936864 NA coding upstream 153813 86334061 ~ 86336728 (+)
LOC118936863 LOC104951401 coding upstream 166513 86287581 ~ 86323830 (+)
LOC118936868 NA coding downstream 83340 86575465 ~ 86671952 (+)
pgm2 pgm2 coding downstream 184465 86676590 ~ 86696929 (+)
LOC110518842 tbc1d1 coding downstream 212281 86704406 ~ 86830606 (+)
LOC118936871 NA coding downstream 328115 86820240 ~ 86821014 (+)
LOC118936872 LOC106593007 coding downstream 390227 86882352 ~ 86916919 (+)
G932208 NA non-coding upstream 2147 86487309 ~ 86488196 (+)
G932201 NA non-coding upstream 8929 86479611 ~ 86481414 (+)
G932194 NA non-coding upstream 30409 86458680 ~ 86459934 (+)
G932184 NA non-coding upstream 33444 86441024 ~ 86475840 (+)
G932182 NA non-coding upstream 49658 86422296 ~ 86440685 (+)
G932217 NA non-coding downstream 23314 86515439 ~ 86516663 (+)
G932223 NA non-coding downstream 38461 86530586 ~ 86531638 (+)
G932238 NA non-coding downstream 61499 86553624 ~ 86554576 (+)
G932258 NA non-coding downstream 102254 86594379 ~ 86594593 (+)
G932268 NA non-coding downstream 173570 86665695 ~ 86666265 (+)
LOC110513338 LOC106595035 other upstream 286159 86201044 ~ 86209191 (+)
LOC110528614 LOC106592313 other upstream 477802 86008932 ~ 86017575 (+)
LOC110528615 LOC106597603 other upstream 537670 85951030 ~ 85957092 (+)
LOC118936495 LOC106594836 other upstream 587731 85900556 ~ 85920664 (+)
LOC110511479 klhl5 other downstream 505661 86997786 ~ 87054035 (+)
LOC110516832 wdr19 other downstream 626957 87057752 ~ 87129649 (+)
G932422 NA other downstream 703394 87195519 ~ 87288556 (+)
G932466 NA other downstream 888543 87379860 ~ 87390230 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017853 NA coding CM030131.1 CM030131.1 25273953 ~ 25299127 (+)