G932270


Basic Information

Item Value
gene id G932270
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 86675792 ~ 86676470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1062546
ccagcacCCAACATATCACAGCACCCAATATACTGACCCTTCTAGAAGGTACAACATACCACAGGACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCATCCAGACCCTCCTAGAAGGTACAACATGCCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCC
>TU1062547
ccagcacCCAACATATCACAGCACCCAATATACTGACCCTTCTAGAAGGTACAACATACCACAGGACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTAGAACATACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACA
>TU1062548
ccagcacCCAACATATCACAGCACCCAATATACTGACCCTTCTAGAAGGTACAACATACCACAGGACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCATCCAGACCCTCCTAGAAGGTACAACATGCCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCC
>TU1062549
ccagcacCCAACATATCACAGCACCCAATATACTGACCCTTCTAGAAGGTACAACATACCACAGGACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATGCCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACATGCCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCC
>TU1062550
ccagcacCCAACATATCACAGCACCCAATATACTGACCCTTCTAGAAGGTACAACATACCACAGGACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATGCCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACATGCCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCC
>TU1062551
ccagcacCCAACATATCACAGCACCCAATATACTGACCCTTCTAGAAGGTACAACATACCACAGGACCCACTATACTGACCATCCTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCCTCCTAGAAGGTACAACTTACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCCACTATACTGACCATCCACTATACTGACCCTCCTAGAAGGTACAACATACCACAGCACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1062546 False 420 lncRNA 0.49 3 86675792 86676397
TU1062547 False 269 lncRNA 0.48 3 86675792 86676470
TU1062548 False 361 lncRNA 0.49 3 86675792 86676397
TU1062549 False 429 lncRNA 0.50 3 86675792 86676397
TU1062550 False 472 lncRNA 0.50 3 86675792 86676397
TU1062551 True 384 lncRNA 0.48 2 86675792 86676397

Neighbor

gene id symbol gene type direction distance location
LOC118936868 NA coding upstream 3840 86575465 ~ 86671952 (+)
LOC118936866 NA coding upstream 265920 86405457 ~ 86409872 (+)
LOC118936865 NA coding upstream 279258 86395193 ~ 86396534 (+)
LOC110514239 LOC106594008 coding upstream 280726 86368819 ~ 86395066 (+)
LOC118936864 NA coding upstream 339262 86334061 ~ 86336728 (+)
pgm2 pgm2 coding downstream 120 86676590 ~ 86696929 (+)
LOC110518842 tbc1d1 coding downstream 27936 86704406 ~ 86830606 (+)
LOC118936871 NA coding downstream 143770 86820240 ~ 86821014 (+)
LOC118936872 LOC106593007 coding downstream 205882 86882352 ~ 86916919 (+)
LOC110512499 LOC106594418 coding downstream 244102 86920572 ~ 86939031 (+)
G932251 NA non-coding upstream 2409 86672652 ~ 86673383 (+)
G932268 NA non-coding upstream 9527 86665695 ~ 86666265 (+)
G932258 NA non-coding upstream 81199 86594379 ~ 86594593 (+)
G932238 NA non-coding upstream 121216 86553624 ~ 86554576 (+)
G932223 NA non-coding upstream 144154 86530586 ~ 86531638 (+)
G932310 NA non-coding downstream 104487 86780957 ~ 86784288 (+)
G932311 NA non-coding downstream 121573 86798043 ~ 86799056 (+)
G932313 NA non-coding downstream 130515 86806985 ~ 86808585 (+)
G932315 NA non-coding downstream 150113 86826583 ~ 86827247 (+)
G932316 NA non-coding downstream 152279 86828749 ~ 86829523 (+)
G932184 NA other upstream 199952 86441024 ~ 86475840 (+)
LOC110513338 LOC106595035 other upstream 471608 86201044 ~ 86209191 (+)
LOC110528614 LOC106592313 other upstream 663251 86008932 ~ 86017575 (+)
LOC110528615 LOC106597603 other upstream 723119 85951030 ~ 85957092 (+)
LOC118936495 LOC106594836 other upstream 773180 85900556 ~ 85920664 (+)
LOC110511479 klhl5 other downstream 321316 86997786 ~ 87054035 (+)
LOC110516832 wdr19 other downstream 442612 87057752 ~ 87129649 (+)
G932422 NA other downstream 519049 87195519 ~ 87288556 (+)
G932466 NA other downstream 704198 87379860 ~ 87390230 (+)

Expression


Co-expression Network